RNA id: TU91596


Basic Information

Item Value
RNA id TU91596
length 2421
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G61868
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7545810 ~ 7548323 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAGTTGGGTGAAGTGCTTGTGTGCATACTTGGGGTTTAGTGACATGCAGCAAATGGGAGAAACAGAATTTGACGTATTtacaaaaagaatgaaagagaatATCTGTTATGAACATTGATGTTTTCTGAAcatgatacattttaaacaaatgagaACAGAAGAGAGGGATTCATATAATACACTCAATATATATATGGGGATTATGTAGGGGTATATACTATGTAGATCTATTAATCGATAATGAACACCACTCCCATTCTCTTGCGCTTCTGTCTGAGCTGATTGAGCCGGAGTTGCGCCTGTATACCTGCAGGGCCGTGGGGTCCTGCCTCCTCCATATTCTCTTTGTTCTCAGAGTGTTTCTTTTGGCCACGAGACTTTGAGGGCAAGAGTGGCATATCGTGGCCAAATGTGTGCCCACCTTGCCCACCAGATGCTGTTTTACAAAGCTCTTCGGCTACCTCTGGAGAACTTCTGAGATGCTCGAGTCATGGAACATGGTCTCAAAGGCCTGGTGAATCTCAGCAAATGAGGGTCTATCCAGTGGACTCCACTGCCAGCCTaccaacacacaaacaaaatgtgGCTTTACCTTAAACCTattctttgattaaaaagttTAGTGCCATGTAAGATTTTTTGTAGAGAAGCAGTGAAACTTCAGTGAcaataaaagttacaaaattaattttacaaaagattttttatttcaaacaaatcccgttcttcaaaaaatatataaatgacatttattacacatatataaattaaattacattttaaatataccaaAATCTGCATAATGcttatagagtatatatatgaACGACATctgacatttcttttattacacTAATGAGATTATACTTCATGTTAttaagaagtgtttttaaagtcaCTGTTTGTACTCACAGGCTCTCATGAGCTCATAGACTTTAGGAGGACAGCCCTCAGGCTGCTCCATGCGGTAGCCCTTCTCCAGCAGATCATACACCTGAGACAGGTCGATTCCTGGGTATGGAGACATACCATAGGTGGCAATCTCccaaagcaaaactccaaatGCTGAAAATTGGGGAAAATAAGCAAGTCACTTATTTATAAGCAAATCGACTATTTTGTCTGTAACAAAACTCTTTATGGAGTATCAGAACTTAGTAAAATTTAATTACTAACTGACCCCACACATCTGATTTAATGGAGAAGGTGTTATATGCCAGACTCTCAGGTGCCGTCCATTTGATGGGGAATTTGGCCCCAGCATGAGCGGTGTAAGTGTCGCCCGTCATCAGCCGGCTCAGTCCGAAATCAGCCACCTTGACCACGTGATTCTCTCCGACCAGACAATTACGAGCTGCCAGGTCCCTGAGAAAGACATTGAGAAGCTGGAGTGAGATCTCTCAATGGAATATAAGACCTGTGACAACTCCTCAAGTCTACTGACATTTAAAGCTCTACGCTCACCTGTGGATGAAGTTCTTCTTCTCCAGATACTCCATGGCAGAGGAGATCTGAGTGGCCATGTAGAGCAGCACCACAGCGTTCACCTGCTCCCTGTCACAATCACGCAGGTAGTCCAGCAGGTTCCCGTGCGGCATGTACTCAGTCACTATGTAGAATGGAGGCTCCAATGTACACACACCTAAAAAAGTTGCATCAAAACAAATGACCAATTTATATCTAATAACGTAACTTGGTCAAAACAAATAATCGtttattatgtgaacaaaagcCTGGATTCATGAAAGTAACGCATACTCTAATGGTTGATTAATATAGTCAACAAGTTTTCCAGACAAGAACACCTCTAGTGGGGTCAATTAGACCAAAAGACAAATTAAAGCACATATAGCTTCTTCAGGTGACGTCAACTACCTTCAACTAGTATACTCACCAAGCAATTGTACCAAATTGGGATGTTTCACCTCCTTCATTACTGCAGCTTCCTTCAGAAACTCCTCAACCTCCATGGTGTCCTCCTTTGAAATAAAAGATGGATGgaatatgaaataatacataacaGAACTAGCATGGGTGCAGTATAATGGCCAGCCACTTGGTGGCACACGATGccacataaacatttaaatgcgaTAACAGCCAATGAAAGAGGGGGGAAAATACTGAAATAGGAGCACATGCACAAAAAGACGAACCTTTAGTGTTTTTACAGCTACGGTGAGGTTGTACTTTTTCCAAACTCCTACGTACACCTCTCCGTACTGGCCTCCACCTAACTTGTGCTTCATGGTGATGTCAGTGCGCTCCATCTCCCACTTGTCGTGGATGGGGGAGACGCCGTAGACGGTTGGCTTGTTGCATTTTGGAGCGGGATAGTGTAATGTGGTTACCAGACCATCCGCCACTGTGGAATGATGATGAACCAGCTCAGCTAATGTGCTGAAACGACTTTCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251632.1 lncRNA downstream 151601 7390288 ~ 7394209 (-) True LOC122350888
XR_006251630.1 lncRNA downstream 167351 7377755 ~ 7378459 (-) True LOC122350886
TU91592 lncRNA downstream 237470 7306112 ~ 7308340 (-) True G61865
TU91585 lncRNA downstream 264645 7274590 ~ 7281165 (-) True G61860
TU91454 lncRNA downstream 489390 7017590 ~ 7056420 (-) False xpr1a
TU91746 lncRNA upstream 113894 7662217 ~ 7663259 (-) True G61959
TU91765 lncRNA upstream 201380 7749703 ~ 7778564 (-) True G61965
TU91770 lncRNA upstream 331094 7879417 ~ 7974020 (-) True G61967
XR_006251635.1 lncRNA upstream 403238 7951561 ~ 7954642 (-) True LOC122350891
TU91781 lncRNA upstream 661720 8210043 ~ 8217417 (-) True LOC122350139
XM_043247652.1 mRNA downstream 162998 7380546 ~ 7382812 (-) True LOC122350884
XM_043247357.1 mRNA downstream 168053 7375035 ~ 7377757 (-) True LOC122350680
XM_043247636.1 mRNA downstream 175355 7363235 ~ 7370455 (-) True LOC122350872
XM_043246337.1 mRNA downstream 377037 7137062 ~ 7168773 (-) False cep350
XM_043247630.1 mRNA upstream 46660 7594983 ~ 7652306 (-) True LOC122350867
XM_043247642.1 mRNA upstream 129173 7677496 ~ 7687562 (-) True spata6
XM_043247648.1 mRNA upstream 140538 7688861 ~ 7740456 (-) True LOC122350881
XM_043247643.1 mRNA upstream 202092 7750415 ~ 7763209 (-) True bend5
XM_043247644.1 mRNA upstream 202092 7750415 ~ 7762298 (-) False bend5
TU91479 other downstream 444878 7094898 ~ 7100932 (-) False lhx4
TU91442 other downstream 729086 6814488 ~ 6816724 (-) False LOC122350104
TU91179 other downstream 1102828 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 1620463 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 1928146 5614329 ~ 5617664 (-) True G61513
XR_006251629.1 other upstream 130093 7678416 ~ 7687562 (-) False spata6
TU91784 other upstream 568685 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 844022 8392345 ~ 8416553 (-) False eps15
XR_006251692.1 other upstream 879292 8427615 ~ 8427687 (-) True LOC122351129
XR_006251691.1 other upstream 880502 8428825 ~ 8428904 (-) True LOC122351128

Expression Profile