RNA id: TU91781


Basic Information

Item Value
RNA id TU91781
length 3671
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122350139
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8117008 ~ 8232774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGAAGACTGATGAGACTGGGCTCTTCCTCTCATCCTGGGATAGGATATGCTTAATGTAATAACCTACTGGATGTTTCCGTGCCTCTCTGCCAATCTCAACTTTTGTGGAGGCGATTATTCTAACGACAGTGGATCcggatttaaaaaagaaagaaaaaatcctGAATCGACACCAAGAGAGTTCGATCTAAAGAAGGACATTTTCTTCTTCAAAATAAGGGCGGTCTGGTTTTGCTACtgtttacagagaaaaaaaaaagaaaaaagtaaaagacaaCCACGAGAACTCAAGAAGATATACAACAGAATCCCTGTACCACTTCCAGGGTCTCCAAATAATGAATATTCTcaatttgtcattttgtaataCTTAGGCAACATTGGCTTATAGGTCCAAAGTTATATTATAAGCCATATCCAGTTCTTTTTTGTGGGTTTGTTGGTTGGGTGTGTTCCTGTTTTGAGTAGCTGAGTGGGCAGAGGTGGGTTTTTAGTATTAGAGGAGCTGTAAGGAGCTACACAAGTGATGGGAGGGGAGTTCAGGACTTGTGGGTCTTGTTGGTCTTGAAAGACACTTGCAAGACACGGTCACCCAACCGATACCCATTCAGACTGGCGATGGCCATGGCCGCTTCGTCGTAGTTCGTCATGGTGACGAAGCCGAACCCCTTGCACTTGTTGGTGTTGAAGTCGCGGATCACCTTGACGTTGTTGACGGCGCCGAACGGTCCAAAGAGCTGCCACAGGACGCTCTCGTCCGAGTCCGGTGACAGGTTGTAGACGAAGATGCACCAGCCCGTTCCTGTGTGACCGGGGATATTCATCCCTACTAGACTGGTCATGCTATCGATGGTGATGGGGGAGAACCTGTaggacgagagagagagtgaggaagATGCGTAAGTCAAACTGCCATTAGTTACAACTTCTAGTTGACTCTTCAAGGGTTACACTAGCAATTTCAGTTCCACAGTCTTTTCAGCCTGTCTAAATATCTGCTCCTTGTTTTTCAGGCGGAAGGCAACcggatagtttttttttttttgaatgccgAGTGAAAAGGCTGCGCCCCGGTGCCGGCTGCGGGGTGCCGCGCCGAAGCGACGGGTGCCGAGACGCAGGATCTATTGGGGAACTAAATTACAGGAACTCTGCACATTAATACCTTCGAAATTCATCAGAGATTTCGCATGCAACCGAGTAAATCTGCTCTCATTCTCCTTGTAATCTTTCCATTCttgccttttttttcctccctcatGATACAGAGATTTGAATGCTCAGTTGATTTCACTTAATTGCCTTTCCGCTTAAAGGAAATTTccactttaaataaaaggtaaattGGATAAAAGGTTCATTTCGTGTGCCACCTCTCAAGGAATGACTATAGGCATTATTGGGGTGTGCTTTAATTGAGATTTCCGCTTTGCTGCCGTCGTCGTCTTCGAATCCGAAAGGTTTGGGGAGGGGGATAGGAAGCTGCCAGCGAGCAGAAAATGGAAGCGGCGCTTTCCAGCCAGCTAGCACGGGGAACAGAGTGTATTCCACCCACACCCTCTGCCGCTCCGCAGTGTGTGACTGTGATCGATAGCACTGCACGGACTACAGGGCCGGCCAATTCCCTGCTTCTTGTTCTGCCAAGAATTACTCAGACGTTTCATCTGCGTTTTAGCCCGTTCGTCCTGGCAGAGTCAAtacatctgtctctctctttcgcttTTGTGTCCTGTCGCTTGCGTCTCATTATGTAAATGAAGGGTATAATGGTAAGTCGGCTCACTTTGCGCCTTGTGACAAGCAACCATCTCATGACTTCAATTATGCTGGTATTTCTGTGTAAATAATGAATCCGTAGCCATTATTCATCGAATATGGCTTCGTGGTAATTTGGATGCCAGTCATCTGCGGGCGAGCGGGTGAGGGTCGGACTAGCGGATTGCTGACACAGAGGTGTCTGGTGACTACTAGGGCAGGGCCGAGCGCTGTCTGTTGTTCGAACTAAGGCGAACAGTTGGACGAGGAGTTGCATAGCAACAAGCGACTGACCTAGAGCCATCCCACCCTTCCGAGCTGCCCACCTTCACCTAGCGATGCTCACTTCTTCAGACTGGTCTTTGTTCATTAATTACCTTCCACGGCGTGCTCTGTGAGCAGAACTCCTCCCCAGCCCCCCGTTGGTTTCATCTCCCCTAAATTTTTCCTCTCTTGGGGCAGACGGCTTATTTGACAGCTGATCGCAGCGagtgtaaataaaaaggaaTCTTTCGTCTCgtcatttgttttgaaagacGTCGCTGCCTCGTTTGCATATCCCGTTTCATTGTTGCACTTCCCGTTACTTGTCAgattgtacaaaaaataaacatgttttctttcgAAAAACAATAGTTAGATTCTGATCAGCCAGTGCCAAAATGCAAAGGACTTTTCTAGAAAGAGAAGAAATCTAGTAAATGCGGAGCCTTTACTCTTAACAGAGaggtatctttaaaaaaaagaaagaaaaagaaacgtgCACAATGCACAACCTTTCATGCTACTCCCTCCATCTTAGCCTTGAGTGTTCGAGGGACATCAAAGTGTTTCAATAGATACTAAAATATGCAACAAAATGTCATAAGCACTAAAACATGTTCAAAAGAAGCCTTTTCACTACATCCACAGCAGCACAAAGCAAAAGAACATGAGCAAACCCAACTGATCAGAGGCTCCTAAACCTGCAGTGAAACACTACATTTCCTGCAGGGATCCAGGTGAGCTGTCACCCCCTCCGTCTCGCTCTAGACCAGCTCTTTCCAAcaaataaaatggaaacaaGTAGACGAAAAAACACAATAGCCTTCCATCGATTTTAGCTGTTATATGTAACGCATTGGGAATATACATAATTTCGTTCAATTGTTGGCAGCGTGTAACCCTGAGCTGGACGGAGGTACGGCTTCAGCCCCTGAATCCTGTGGAGGCCACGCTTCAAAACAGGAGctacacaataataaaacacaaaataccaAAACGGAACTCATAAAAAATTTTGAATCATCATAAACACTACAAATTATAAAAGATACTTACACTTTTAGGGCTACAGATTGGAaggttgaaataaaaaataatcaagtCAACAAAAAGGCAAACGAACTGAAGAGAAGGGAAAAAAccttgaactgaactgaatgcATGTGATTTTcaaaaagaagggaaaaaaaaaatcatactgtcAAACATGGACATCTGGCATTCGGTGAAGTTTTAATTACCTCTTAACGCCATAGGCCATATTAAGCAAATTGTCCAGCCTGTAAAGAGAAGGAGGGTTCTGGGGTTAATGCCAGGCAGATGGTTGACTCACTCAGTGGAACTAATGCTACATCCCTGCCTCACTGAAGGAAGACGCCCATCTAGCGATGGGCCATTACACTGTGCTGCCCCATCAGGCATCTCACAGAGTCAATCATACATCCAAAGAACAGCAGACTTGCAGCAGCACTAATGGTAACAGGAGGCCACTTGAATGCCTACCCAGTTATTTAGCCTAACAGTGCTGCAATCCTAAAATATTATTCACTACATAATTTATGtgacatatatacaaataaaattgcaatagtTTCACTCAAACAGTGTGTGGGGGggttataattaaattaagaatgATTTATAATGCag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91770 lncRNA downstream 236023 7879417 ~ 7974020 (-) True G61967
XR_006251635.1 lncRNA downstream 255401 7951561 ~ 7954642 (-) True LOC122350891
TU91765 lncRNA downstream 431479 7749703 ~ 7778564 (-) True G61965
TU91746 lncRNA downstream 546784 7662217 ~ 7663259 (-) True G61959
TU91596 lncRNA downstream 661720 7545810 ~ 7548323 (-) True G61868
XR_006251686.1 lncRNA upstream 36121 8253538 ~ 8269217 (-) True LOC122351107
XR_006251685.1 lncRNA upstream 38052 8255469 ~ 8269217 (-) False LOC122351107
TU91913 lncRNA upstream 209868 8427285 ~ 8430135 (-) True G62076
TU91990 lncRNA upstream 290474 8507891 ~ 8508123 (-) True G62120
XR_006251637.1 lncRNA upstream 494620 8712037 ~ 8739931 (-) True LOC122350893
XM_043247360.1 mRNA downstream 72768 8036622 ~ 8137275 (-) True agbl4
XM_043247643.1 mRNA downstream 446834 7750415 ~ 7763209 (-) True bend5
XM_043247644.1 mRNA downstream 447745 7750415 ~ 7762298 (-) False bend5
XM_043247648.1 mRNA downstream 469587 7688861 ~ 7740456 (-) True LOC122350881
XM_043247642.1 mRNA downstream 522481 7677496 ~ 7687562 (-) True spata6
XM_043246326.1 mRNA upstream 55067 8272484 ~ 8275399 (-) True dmrta2
XM_043247529.1 mRNA upstream 67814 8285231 ~ 8346021 (-) False faf1
XM_043247528.1 mRNA upstream 67814 8285231 ~ 8346021 (-) True faf1
XM_043247198.1 mRNA upstream 139430 8356847 ~ 8371737 (-) True rnf11b
XM_043247944.1 mRNA upstream 155240 8372657 ~ 8391494 (-) True ttc39a
XR_006251629.1 other downstream 522481 7678416 ~ 7687562 (-) False spata6
TU91479 other downstream 1109111 7094898 ~ 7100932 (-) False lhx4
TU91442 other downstream 1393319 6814488 ~ 6816724 (-) False LOC122350104
TU91179 other downstream 1767061 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 2284696 5919961 ~ 5925347 (-) False LOC122350596
XR_006251596.1 other upstream 174928 8392345 ~ 8416553 (-) False eps15
XR_006251692.1 other upstream 210198 8427615 ~ 8427687 (-) True LOC122351129
XR_006251691.1 other upstream 211408 8428825 ~ 8428904 (-) True LOC122351128
XR_006251695.1 other upstream 211836 8429253 ~ 8429320 (-) True LOC122351132
XR_006251694.1 other upstream 212057 8429474 ~ 8429544 (-) True LOC122351131

Expression Profile