RNA id: TU92043


Basic Information

Item Value
RNA id TU92043
length 1530
RNA type TUCP
GC content 0.42
exon number 4
gene id mrps36
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8647270 ~ 8649983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGAAATAAAGGGTTGGCCGTGACAGGCCACTATCAGCACAGTGTTTAGTGGGTTTCGGAGGTCAACATGGGAAAATAACGTTACAATACAATACTAGATAGCGTCTCGTTGGTAAGACTGTATGTTTATTGTGCTTATTATAATGCGCGGGTCTGTAGATTTGAAACGTAACGatagaccttttttttaaaggcagaaCCACTTGTGATTAATGTTAGCAGGACGAGCTATTGTACACTAAAGTAATTTTGCGTTTTGCTTGCAGTAATATATTATTGATGCATGATGTCAAAGTTAATTAGATAAATTcgcatgtatgtgtgcatgaatTGACAGCCTGTTTCATGTCCATTCCGTGTGATTCAGTAAAACGACCGCTTCTCTGCTCTACACTCTATACACACTTTATCAGTAAATGTAACGTTTGTTTCTAACTAAACAATGCAACAATTAAGCAATCATTGTCATTTATGATAGTCCTTGCATGCCCTCGTCCGGTTGCCAGATCTAAAAGCAGAAGCGACCAAAACGTTTTAGGTCGATTCTTTTCAGCAAATCAGTCGAGTCTGTTTGTAGAATCGGTCTGAAGGATTCGAGTTAATTGTTAAGTTTAAACGAACAGTTCGAAAGAACCGATCCGCGGCTTCGGAGTTATAATACAACCGCGCCCTCTTCAGGTTGTTAGCATTCAGTTGCGGTGTCGTCTGTGTCTGAACCGGAAGCAGTATTCGGATGTCGTCATGGGAAGCAAAGTGAGTGGCAAGATGGCAGCTGCCAGTCGGGTCGTGCAGGTTGTGCGACCTCATGCACCTTTAATTAAATTTCCAGATCGGAAGGCCGGCCCTAGGCCGAATGTACAAGAGGCACTAAAGGTGCTTGCAGCCAGTCTCCCACAGCTCTCCCCGTCCACACCTCCACCTACAGCGTCAATATCACCTCCACCCAGACCCCCGGGACCCGTCAGCCGACTGCCCGGCACTCCTGACAGCATTGATGTAGTTAAAGATCTCCCTCACAAATACCGCAGAAGAACCCTTGCGTTAGATGAAATGGACTACATCCAGcgTGGTGGGCCAGAGTGACCGTTGTCTGATCTAATCAGACTTTATGAAAATCAGTTGCCtgacgactttttttttttttttttttttttttcagtatgagGAGTTTATAATACGTTTTACAGCAAACCAAACtaattaaatcagtttaattGTACATACGTATTATTTAACCACTGTAAAGCCTGTGCTTGGTTTTCATCATTTCATCCTTTAGGTGCtctgtatttacattaaaatgcagaaCTCTTTGCTTTGTTAttcttcagtccatcagttatttaatgtttactgGCTACGCTAGCCAGCACCTCTACTGACCATCAGAGTTTATGAATTTCCTCCTCCATTGTATTATATGTTCTGGATTCAGAGAAAAGCACTTATCTGAGTGCCAGCATATTCTACAGgtctaaacaaaataaatcgTTATGGATCGTGAAActgaacaattaaaatatttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91990 lncRNA downstream 139158 8507891 ~ 8508123 (-) True G62120
TU91913 lncRNA downstream 217146 8427285 ~ 8430135 (-) True G62076
XR_006251686.1 lncRNA downstream 378064 8253538 ~ 8269217 (-) True LOC122351107
XR_006251685.1 lncRNA downstream 378064 8255469 ~ 8269217 (-) False LOC122351107
XR_006251572.1 lncRNA downstream 414507 8217019 ~ 8232774 (-) False LOC122350139
XR_006251637.1 lncRNA upstream 62072 8712037 ~ 8739931 (-) True LOC122350893
TU92069 lncRNA upstream 62258 8712223 ~ 8739953 (-) False LOC122350893
TU92070 lncRNA upstream 62258 8712223 ~ 8713432 (-) False LOC122350893
TU92189 lncRNA upstream 263517 8913482 ~ 8914004 (-) True G62239
TU92177 lncRNA upstream 268793 8918758 ~ 8920904 (-) True G62235
XM_043247251.1 mRNA downstream 41115 8600995 ~ 8606166 (-) True rab3c
XM_043247026.1 mRNA downstream 166550 8478681 ~ 8480731 (-) True ndufaf2
XM_043246030.1 mRNA downstream 170734 8469042 ~ 8476547 (-) False depdc1a
XM_043246028.1 mRNA downstream 170734 8469042 ~ 8476547 (-) True depdc1a
XM_043247880.1 mRNA downstream 180779 8463209 ~ 8466502 (-) False LOC122351041
XM_043246672.1 mRNA upstream 2339 8652304 ~ 8657286 (-) True pola2
XM_043246846.1 mRNA upstream 96922 8746887 ~ 8808599 (-) True skia
XM_043246733.1 mRNA upstream 170391 8820356 ~ 8911987 (-) True prkcz
XM_043246734.1 mRNA upstream 170391 8820356 ~ 8911982 (-) False prkcz
XM_043246731.1 mRNA upstream 170391 8820356 ~ 8909978 (-) False prkcz
XR_006251693.1 other downstream 217507 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 217737 8429474 ~ 8429544 (-) True LOC122351131
XR_006251695.1 other downstream 217961 8429253 ~ 8429320 (-) True LOC122351132
XR_006251691.1 other downstream 218377 8428825 ~ 8428904 (-) True LOC122351128
XR_006251692.1 other downstream 219594 8427615 ~ 8427687 (-) True LOC122351129
XR_006251592.1 other upstream 2461 8652426 ~ 8657286 (-) False pola2
XR_006251623.1 other upstream 607987 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 1304785 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 1311832 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1739218 10389183 ~ 10392043 (-) True G62760

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071004 True 866 mRNA 0.44 5 NC_007119.7 17163494 ~ 17167830 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_04377762_04378990.mRNA True 1049 mRNA 0.42 4 CI01000010 4377147 ~ 4379082 (+)
eurasian perch (Perca fluviatilis) TU86478 False 1243 TUCP 0.42 5 NC_053117.1 25659575 ~ 25663370 (-)
striped catfish (Pangasianodon hypophthalmus) TU151932 True 4463 TUCP 0.40 5 NC_047602.1 7424023 ~ 7430997 (+)