RNA id: XR_006251681.1


Basic Information

Item Value
RNA id XR_006251681.1
length 1181
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122351086
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8936078 ~ 8942255 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggaaaataaaagaaatcccGCAGCCAGGCACGGGAAAAACACTTCAGCGAACAAGAGAGATCAAAGGAAATCAGCTGAAAACAATGTTCCAGTGTTTTGAAATTTCCCTTGTGCTTACACAATAATAGCCTACTGGGTTAGACAGCCTGACAGGAAATCTGGCATCAGGTTAAAGTTTAAATAGaagctaTTTGCTGTCCAGCAGTAATACATGGATTGGATAAACTGAGACTAGATAGCGTTTAAGCTTGCCTTCAAAATGTCGAATTAATTCCTCAGGTAGGACAGACACCTGCTACATATTCAGTTTATTCTGATTGCTCCATGTGTGAGACACTTGGTGAGTGCTTTTCTCCAGGCACCTGCTATGAATATATTAACATTCACAAAGTGTGTCCCCTTCTTCTCCGTGTGATCACCACTGTCTTGTGAGGAGACAGCTCATCTGTTCGGGGTGCCACGTTAAAGGCCGGACACTTGTTGGGTTTTGGTTGGCTCCGTCTGCTTCAGGATCTTAAAATGGCTTCTGGACAGATATTCATGGAGGCGTTCCTTAACATTTCTAGGGTTGCTGTACGTTAATGCAGTACAGTCAATTGAAAGGTTGTAGATCTGAATGCACGAAATCAAAGGCCGTGAACGGTCTACACTGTGCTTTTGAATACAACTTTTAAAAGCTGTAGATATTTCGTATGAGAGAGGGGTCTTGGTTGAGAGGAGTGGCACCTGGTGTGGTTTTCTGCTACTGTAGTCCATCTGCTTCAAGGTTTGTGCATCGGTAAAAAAATAGAACTAGATATTTTCtcaaatactaaataaaagctattttcttTAAACTACATAAACCCCTTGTCAGACCAACAAAATAAGTGTTGTCCTAATTAGTCAAACACAGTTATCTGATCAAAGATTTTCACGTTGTTGAAATGTTAAGGCTTTGTGagctcccagcatgcattgcagcatgaataaattacgcagttactgttataggattaTTGTTTTGCCGTTTGCTaacttttctgttgttttatcattattgttaggTATTTGTTGTACTGTctcatctttttaacatttgttgatTGCCACCGTTCTTGATGTTAGTTTGTCAAGTTTTCAGGCCTAGAATATGTTCAACCACTTATCCATTTTTTGGATATCTTAGTTTGTAAGTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92191 lncRNA downstream 16622 8921481 ~ 8921696 (-) True G62241
TU92177 lncRNA downstream 17414 8918758 ~ 8920904 (-) True G62235
TU92189 lncRNA downstream 24314 8913482 ~ 8914004 (-) True G62239
TU92069 lncRNA downstream 198365 8712223 ~ 8739953 (-) False LOC122350893
TU92212 lncRNA upstream 26034 8968289 ~ 8972773 (-) True G62255
TU92222 lncRNA upstream 64300 9006555 ~ 9006779 (-) True G62262
TU92223 lncRNA upstream 64579 9006834 ~ 9007105 (-) True G62263
TU92203 lncRNA upstream 88610 9030865 ~ 9038700 (-) True G62250
TU92206 lncRNA upstream 88610 9030865 ~ 9038464 (-) False G62250
XM_043246899.1 mRNA downstream 3567 8922693 ~ 8934751 (-) False st6galnac5b
XM_043246900.1 mRNA downstream 3574 8922693 ~ 8934744 (-) True st6galnac5b
XM_043246901.1 mRNA downstream 4478 8922693 ~ 8933840 (-) False st6galnac5b
XM_043246731.1 mRNA downstream 28340 8820356 ~ 8909978 (-) False prkcz
XM_043247484.1 mRNA upstream 30538 8972793 ~ 8975940 (-) True LOC122350776
XM_043247006.1 mRNA upstream 49088 8991343 ~ 9001962 (-) True tnni3k
XM_043247015.1 mRNA upstream 59966 9002221 ~ 9006003 (-) True fpgt
XM_043247013.1 mRNA upstream 67471 9009726 ~ 9018000 (-) False acot11b
XM_043247011.1 mRNA upstream 67471 9009726 ~ 9018000 (-) False acot11b
XR_006251592.1 other downstream 281032 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 288353 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 288353 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 508544 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 508774 8429474 ~ 8429544 (-) True LOC122351131
XR_006251623.1 other upstream 315697 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 1012495 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 1019542 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1446928 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1498509 10440764 ~ 10478685 (-) False G62826

Expression Profile