RNA id: TU92551


Basic Information

Item Value
RNA id TU92551
length 744
lncRNA type intronic
GC content 0.37
exon number 2
gene id G62519
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9408414 ~ 9414439 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGACGGCCTGAGTGGTGGCCGCACATGAGTGGTAATATACCCGTATCACCTTTTTCACACACGACACattttgtaaatcatgtttatttatggtttagttTAACTTTCTTGTCAGTTGCATTTAATCACATAAGCATACAtgatttataactttattttccataggtttcatttataacatacattgttactgatttggagtgcacacaaattagttgctttgtatgtgttatttacctttgtttctattttgagttAAGTTTACCGGCGACGTGTGGCGACGATTGTCAGGCCCAAGTACTTCAACTTCCTGGTGTGACGGAAATTAGAGTCCGGGTGGAAACTGGGAATTTAAAGGCAAACGGGTCTCCCTGGACGTACCATTCGGAGAGATGGTCGGGGGACGAGCAAGAAAGGAAaaattgctgattttattaattatatttagttgtctatttgttgtttggttatgggttaggttctttggggatgatttagtgtttctttgtgctaggtttatctttttgatttgattcatcttgttaaatgtgaagtattgttgatttccctcttaatttgtaatgggcccatctttctctttataagctgttgtgttgtccatttttgggtggctttttgttttttggtctgtttctgtctgtctggtttGTTGTGTAAAGTTACTTTcttgagtttaattaaaagggttttttttctggtgacgGCTGGTGTTCCTTGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92265 lncRNA downstream 323220 9082795 ~ 9085194 (-) True G62293
TU92203 lncRNA downstream 369714 9030865 ~ 9038700 (-) True G62250
TU92206 lncRNA downstream 369950 9030865 ~ 9038464 (-) False G62250
TU92223 lncRNA downstream 401309 9006834 ~ 9007105 (-) True G62263
TU92222 lncRNA downstream 401635 9006555 ~ 9006779 (-) True G62262
TU92557 lncRNA upstream 112188 9526627 ~ 9526966 (-) True G62525
TU92615 lncRNA upstream 288520 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 288937 9703376 ~ 9703598 (-) True G62565
TU92617 lncRNA upstream 293334 9707773 ~ 9708194 (-) False fam78bb
TU92618 lncRNA upstream 294534 9708973 ~ 9709221 (-) True G62567
XM_043246757.1 mRNA downstream 41627 9353668 ~ 9366787 (-) True rorca
XM_043246925.1 mRNA downstream 55860 9335682 ~ 9352554 (-) False sh3gl1b
XM_043246923.1 mRNA downstream 55860 9335682 ~ 9352554 (-) True sh3gl1b
XM_043246924.1 mRNA downstream 55862 9335682 ~ 9352552 (-) False sh3gl1b
XM_043247590.1 mRNA downstream 79226 9321262 ~ 9329188 (-) True stap2b
XM_043247299.1 mRNA upstream 89573 9504012 ~ 9511635 (-) True abhd17ab
XM_043247431.1 mRNA upstream 99512 9513951 ~ 9520753 (-) True zgc:77486
XM_043247902.1 mRNA upstream 107282 9521721 ~ 9526061 (-) False plin3
XM_043247901.1 mRNA upstream 107282 9521721 ~ 9526061 (-) True plin3
XM_043246992.1 mRNA upstream 114527 9528966 ~ 9552304 (-) True rgl1
XR_006251623.1 other downstream 145588 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 751128 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 758449 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 758449 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 978640 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 540311 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 547358 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 974744 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1026325 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 1125780 10540219 ~ 10540291 (-) True trnar-ccg_26