RNA id: TU92616



Basic Information


Item Value
RNA id TU92616
length 223
lncRNA type intronic
GC content 0.53
exon number 1
gene id G62565
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9703376 ~ 9703598 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAAAACAGAATAGCTGCTCTGAAACATCGGCGTGGTTGCGCTAAACAGAGTTTTGTATCGCAGGCGAAAGCAATTACGTGCTCACTGCCTAATCTAAAGACAGAGCAGGAGAAGGAGATAGAGACATTCTCACACCCACCCACGAGGCCATGACGCGTGATGTGGGCCCTTCTGATGCTGCCTGGGGGGCCTGTCTGTGTGGAGGTGTGGACatgtgtgtggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92615 lncRNA downstream 185 9702959 ~ 9703191 (-) True G62564
TU92557 lncRNA downstream 176410 9526627 ~ 9526966 (-) True G62525
TU92550 lncRNA downstream 288937 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA downstream 288937 9408414 ~ 9414439 (-) False G62519
TU92265 lncRNA downstream 618182 9082795 ~ 9085194 (-) True G62293
TU92617 lncRNA upstream 4175 9707773 ~ 9708194 (-) False fam78bb
TU92618 lncRNA upstream 5375 9708973 ~ 9709221 (-) True G62567
TU92619 lncRNA upstream 7048 9710646 ~ 9710996 (-) True G62568
TU92632 lncRNA upstream 28308 9731906 ~ 9732154 (-) True G62576
TU92749 lncRNA upstream 291969 9995567 ~ 9997484 (-) False adamts10
XM_043247436.1 mRNA downstream 85250 9606505 ~ 9618126 (-) False edem3
XM_043247437.1 mRNA downstream 85250 9606505 ~ 9618126 (-) False edem3
XM_043247434.1 mRNA downstream 85250 9606505 ~ 9618126 (-) True edem3
XM_043247809.1 mRNA downstream 97410 9581828 ~ 9605966 (-) True zgc:92140
XM_043246023.1 mRNA upstream 82654 9786252 ~ 9837450 (-) False trabd2b
XM_043246021.1 mRNA upstream 82655 9786253 ~ 9837450 (-) True trabd2b
XM_043246020.1 mRNA upstream 82655 9786253 ~ 9837450 (-) False trabd2b
XM_043246022.1 mRNA upstream 82655 9786253 ~ 9837449 (-) False trabd2b
XM_043246019.1 mRNA upstream 82657 9786255 ~ 9837449 (-) False trabd2b
XR_006251623.1 other downstream 440550 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1046090 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1053411 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 1053411 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1273602 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 251152 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 258199 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 685585 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 737166 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 836621 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile