RNA id: XM_043247557.1


Basic Information

Item Value
RNA id XM_043247557.1
length 6236
RNA type mRNA
GC content 0.43
exon number 2
gene id fam78bb
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9700394 ~ 9708621 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATTTTTGGGGGTGGGGGGActgaaaatagtttaaaatcaaatacagTGATTAAATATGACTGTTCTTCATCAAAAAATAGACAGTCAGATCCACGGATAaaattcagtggaaaaaaagcGGGCAAGTGACGCAAGTAAGGCCTGagatgagagacagagacgaCCGCAAAGACACAAGGACCTTCTGTCTTACTCCAGATTTATCTTTCAACAGACATTTGTCCTTGTCTTTACTCTGCTCACAGCccgaaaaaaaaaccctggtcCGAAACTTTGGTTAGATTCcaagaaaatgtaactttccAGTTATGTTCTTTTGTTAGTAAAAAgtacagatgcttttatttgattaaaccCCCCAAAAATAGGTCCAAATGTAATAACATGTAAAATCAAGCGTCAGTGTCATATGTtaaattttttcagtttaatctcagaaaatgttcattatCAAGCAGCAGGCTGAATGGTGTGAAAGGATTGAATGTAATTAGCCCGAAAGTCTGGCAGGAGCCGTGGACTCCAGGCATCTGCGATGTAGCTGAGCATTGAATAGTGATGAGAGATGGAGCTTCAGCATCTCCAACCTTTTATTACATCGAAAAAGACAGAGTGAGAGGGAGAAAAGGGAAGACAACGTATAACGTACACATCTAGGCCTACATTTAGCCGACGCTCACAAACAGGGCCTGcatcgacacacacacacacacacacacacacacgctactcCTCTTTTAtctttatgacattttattaaagcagaAAGGTCAGATACAAACAGGTTTCTGATGAGTTCTTCACTTTCTGTGCTCCTCCCACAATTCATCcagtaccacacacacacacacacacacacacacacacacacacactcttttcgTGTCACCCTAAAAGACACCAAGCAAGTGAACATTCTATTCATAGCATTAAATACTCAGATGTTTTAGGGATTTTCCTGTTCTACTCCACAGCCCCAGTTTCCTCTAGATAACATGGATTTAAGCATTTTGTTGTACTGTTTACTAAAGGAGGATTCTCATGCTTGTTCCTCCACTGAGTCACATTACACAGTCTGAATAGGTGCTAAAGTGGTCTAGACTTGCTCAGCAAAGGACAGAGAAGGCCTGGATTATTTACCCACCCATGTAAGGATTACAAACCATCTTAACCTGTCCATTAGCGCTGGGACCGTCTCAGACAGTCAGGCTACCGGACAGACCCTCTTTCACCTGAGCTCTAATCCACTGCACCAGAAGCCTGATCTGATAGAACCAGAGAGGCTGAACTGGACTGAAAAGCCCTGCTCATGCCCATGCTCTCTTTCTTGATTTCTTAAGctagatttagaaaaaaaaagatagggGTGTGTATCACAATCATCCATGTGCCATATGCAGATGAAtttcacataaacattttttttctgcattagaaccaaaaaaatccaaaaaaaaacttctaccAGCTCCGTTATTACAAGATCCGAGCAGGTGCCCAAATTGACGAGCATGATTCAGAAGCGATGTCTCCCCCTTCTggacattttgttaaatgtagaAAGCGTTGGAGAGATGCTGACAGAAAGCACAAGTAGACGCAGGATAAAGttctaaagctttttaaaacgtttttgcaTTGTGGCAGTTTTTCTGCGTGCTACCTAGTGTTACGAAGGACCTCAAACCAGACCGCGTGACTCATGAGTCATACTACGCATGACACGTATTCACATTCAAGTCACAGAAAATGAGTAGAGGTCGAcatctaaaagtttttttttaatctctctaCCTCACTTCGTCCAGCTGTTCGTGTCTCTTTGTGGCAGACACCGGCTCCCTGCGCATTAATTCGGCTTTAGAAGAACGAGCTGGGAGCGCAGACATTCATTAACATTCATCCGTTAAGCTGACGCTTTTATGTAAAGCTAAAAAACGAGGGATTTATTCTAAGCAGGCAGCCGATTGTCATTCCCTGATGTCACTCTCACCTGTCCACGTTTATTCTGTCAAGTCTGTAATTTACTGAGGGGTGAATTCAGACTCACTAACCACCgtcatcttcttcttctgacCTCAAACTAACTTAAGACACCAGCCAATTGTCGCAGTGATGTTTCCCTGACGGATAAATTTGACACGAGATCGGCCTTAGTGACGACAGTCCATCTATGCAGGTTGTCATGGTTACACGGAAAACCGTCAATTAAGAAGCGGAACATGTCTCTCGCGCTGTATAATCTCCCCTGTGGCTAATATGTAAGAGAGAAGGGGAGGTAAATACGGATCAAAGTTACAAaaggtaattattattttcgGTTCTCAAGTGAGTACGTAGCCCTAGCGGTACAAACTACCTTTTGAATCCGAAATAGGCTATATTATGAAGAAGTATAAAATACGATGCAGCACGATATATTCAAGGCTCTCAGTGAATCATGGAGGAATCGATTAAGGCTCttttgagaaaataataataataataataataataataaacttgtTGAGACGTATTGGTTTCGTGATAATCAAGCTGACAATTGTGTCAATCAAACGATCAGTACGCTTCTAAAAAAAGAGCGCTGAAGCGGTGTACTGTTGCTATAGCAACTTCGCGAACATTTAGCGCGTAATGATTAACGCGTAATCTTACTTTTGTGAATGGTGTAACGTGCGTTACAGACTCATGTAAcctaaccttttttatttatttatttgttccacTTTTACATAGATTACCTAAAATTAGCAGAGACCCCGTTCAACACTGATTATCTATTCATGCTTCCCATATAGGATATTATTACTAAAGAATTACGAATTTCAGGCGTTTTTCATATTCAGCAACATCAACAGGTCCAAACTCCGGGTATCAATCTTGAATCTTGCAGCCGTTATACCGTTACCGCGCTGTAAAGTTATTTGTGGTTTTGATTAACGAAGGATCCGAGATGATGAACGGAGCGTAGCTACGTGAGGAGGACTATAACGCGCACTGGTACTCCTACGCGCCTCTGATCGTTCATTCAGCACCACAGCAACCGAACAGCGACCGCGGCGAGCACGCCGACAACGGAGACGGGAacggtttatttttaaagcgcACGGCAGTCGTTGTCAAAGCGCATCGTCGCGGTTTACGCGCTCTCATCCGGACGCCTCGCGTGTTAACACGCGGACGCCTGACTACCGAAGGAATACGCGCTATAACGGAACGTCAAACGCGATTTGATCGAGAGCAACGTTCCGCTTagtaacatactttttttttttcctcgagGCTCCTCTTCTGTCGCAAATCATGAAATACTTTGAAACTGTTCGTTGTTCCGAAAGCGCGAACATACATCGAGAAAAACAGAATAGCGACCACCTCTTGTCGAGGCGAGCGGTCCGCCACACCTGACTTGTTTTTCTGCCTCCGGTTGTGACATGAAAACTCGGACCAGAAAGAAACGGATGAAAGGGCGAAGAGCTGCAAAAGGCCATGCGGATTTGAAAGGGAACATATCAGATTGAAGTGGGAGCCCGGAACAATCCACAAGTCCGAACCGCGACTGACAATCACAGGCATGGGGACACCAAAGATCAGGAGACGGTCGGAGGTCTCGCAACCTGTTGTTGATCCCGAGTAGACAGATTATTATATGCTATTATATCTAAACGGCAATGACTTTGGGGGGAAAACACGTGCTTTTGACTGATTTTTGTCTCGTTTCTTGATTTGTgtttcttaattattaatttgtggAGCGACTACATTGGACGCCTGGACTAGATCGAGTTGTTTTTTCGggaatataaaagtatatttatattaggaAATAAAACACCATTCATGGTTGGTTGGTTACCCTGATTCTGACCCTCTCCAGCCATGGGTTGCCTTCAGAGCGTCGCCTGCAAACCCCGAATTAAACGCGAGAACATCGTTGTTTATGATGTGTCCGCTACTATTGACCAGTGCCCCACAGTGATCGAGGAGAATTCACCCATAGTGCTCCGCTACAAAACTCCGTACTTCAAGGCCTCCGCTCGGATAGTAATGCCGCCGATCCCTCGAAATGAGGCTTGGATGGTGGGTTGGATTCAAGCATGCACTCAAATGGAATTCTACAACACCTATGGAGACCTCGGCATGTCAAGCTGGGAGCTGCCAGAGTTACGAGAAGGACTGGTGAAGGCCATCAGTGATTCAGACGGCGTGAGTTACCCGTGGTACGGAAACACGACTGAAACTGTGACTCTCTCCGGCCCCACGTCCAAACCTTCACGATTTACTGTCAGCATGAACGATAACTTCTACCCCAGCGTTACATGGGCCGTACCGGTGAGCGAGAGCAATGTGCCTTTGCTCACGCGGATCAAACGCGACCAGAGCTTTACCACATGGCTGGTAGCTTTGAATATGGCCACACAGGAGAAGATCCTCCTGCAGACTGTGAAGTGGAGAATGAAAGTGGACATCGCTGTGGACCCCTCTAAGCCATTGGGCTCTAGAGCAAGACTCACTGGCCGGATGCACCAGGACCAGCCCAAGGTGTTGACCCATATGGAGCTGATCCCTCCTAACGCTATGGGTAAACCCAATGCTAATGACGCACAAGTGCTCATGTGGAGACCTAAGCGAGGTCCACCATTAGTGGTGATTCCCTCCAAGTAGCAGGTTGTGGCAAAACCTGAAggtttttaatcaaaatctgCCTTAAATCCACACTGCTGCCTTTAAAGAGATACTTGGTTCTTAAACAGCCTTGGAGACACTTAAAGGGgcagttcataaaaaaaaaaaaaaaaaaaaatcttaattctatatttttttactcaccctcatgtcactccaaacttgtatgacgtttatttattttgtagaacacacacaaatatattttaaacaatgtttctGTCCATCCAATGACACAAGATAAAGGACCCTAGTCAGACAGGTTTAAGAAAAATTATAGTTTggttgaactgtccctttaatttgAAATTGACATTTGCCTTAAATCCTTAGACTCAAGTTCAGGAGAAGAAACCATACATCTGCTCTACAAAAAGGGATACTGCACCAAAAAccataaaaattctgtcatagtTTACTCACCTTTCCATCATTCGAAACTAttatactactatatatatatatatatatgtcagtGGGTTCCAATGTTTTTTGGTTCCCagtattcttcaaaatgttcttatgcagtaaacaaaatgacaattctTTATGGGTGGAGTATTCCTAAAAGGCTATTCAGCTATTCAGATTACTTAGCTCcaacattttctctttcaagTTCTCTGTAAGTGTAAAATGCCTGGGCTACACAGAAGCCAGTCTTGCTTAACATCTTAATTATAGATGAATCTATGTGGCAAAACAAAAGAAGCAGTTGTGCATGAATGTACGACTTCAGAAGGTCTACAGCCAAATTCAGCACTGCCTTTCAGTTCAACCAGTTTTACTGCAAGTAAATTTTGAAGGCAGAAGAAAGCTTTAACCATCAGATATGTTTGCTACTTAGCACTGCATAATGTAAGTAAGAAGAGATGTAAGACTTCTTAATTCCACTGAGCATAACCTGGACCGCGAATAACGCTGCAGTAGAAATGAGGGATCTTCAGCCGCTTAAGTTTCTCTGCTCTACGCTTAAGAATGTCTGGAGCTGTCTACTAATTCACTCTTCTGCTCACCTGGGAGCGAGGGAATCGAGGGAGGGGAAGAAAGAGATTTGAACAGTGCTGCAAACGCCAACTCCCACCGCTACTCATTAGAGAGGTGAAAACCATCCGGACCTTCCTACTGAGataacaaacacacatccagacacaaaagcacaacaaaCACTCAACTGCCTTCTTTGAAGCACCCTCCTCTAGAGAGTCCTGCGCCTGCACAAATTACAGTGGAGCGACtgtttgattaacaaaaatggATCCAATCAGATTGTTTGAAAGCATTAAAACCTCTGGATTTGAATTCACAATGCCATGTGGGATTTGCAGACTTCAAAAACGACCCAATGCTTGTCTACAGAGGTCACTGTAGAGTTTATTGATTTTGAGGTTCACAGTGTGTTCTGAAGGACTGGGGCAGCTAGAGTTGTCCTGACTGTAAAATCGATTtgcctttttaattaattaccttTTTCAAACTGTGACTGCATGCATTGTTTTTAcaccttttgaaaaaaaacaacaacccttttttttcagttttgtgctG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92557 lncRNA downstream 173428 9526627 ~ 9526966 (-) True G62525
TU92550 lncRNA downstream 285955 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA downstream 285955 9408414 ~ 9414439 (-) False G62519
TU92265 lncRNA downstream 615200 9082795 ~ 9085194 (-) True G62293
TU92206 lncRNA downstream 661930 9030865 ~ 9038464 (-) False G62250
TU92618 lncRNA upstream 352 9708973 ~ 9709221 (-) True G62567
TU92619 lncRNA upstream 2025 9710646 ~ 9710996 (-) True G62568
TU92632 lncRNA upstream 23285 9731906 ~ 9732154 (-) True G62576
TU92749 lncRNA upstream 286946 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 334567 10043188 ~ 10043398 (-) True G62670
XM_043247436.1 mRNA downstream 82268 9606505 ~ 9618126 (-) False edem3
XM_043247437.1 mRNA downstream 82268 9606505 ~ 9618126 (-) False edem3
XM_043247434.1 mRNA downstream 82268 9606505 ~ 9618126 (-) True edem3
XM_043247809.1 mRNA downstream 94428 9581828 ~ 9605966 (-) True zgc:92140
XM_043247810.1 mRNA downstream 102031 9581828 ~ 9598363 (-) False zgc:92140
XM_043246023.1 mRNA upstream 77631 9786252 ~ 9837450 (-) False trabd2b
XM_043246021.1 mRNA upstream 77632 9786253 ~ 9837450 (-) True trabd2b
XM_043246020.1 mRNA upstream 77632 9786253 ~ 9837450 (-) False trabd2b
XM_043246022.1 mRNA upstream 77632 9786253 ~ 9837449 (-) False trabd2b
XM_043246019.1 mRNA upstream 77634 9786255 ~ 9837449 (-) False trabd2b
XR_006251623.1 other downstream 437568 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1043108 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1050429 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 1050429 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1270620 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 246129 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 253176 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 680562 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 732143 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 831598 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile