RNA id: TU92632


Basic Information

Item Value
RNA id TU92632
length 249
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G62576
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9731906 ~ 9732154 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCGATCTGCATCTGTGTACACAAATACTCTCAACAGGATCCCCTtcacacgtacacacactcattcattcatttgctgTACTGGCTCTTTAAATTACTGCTGTgtcaacacaaaaaaatgacacttccatacactcacacatacgCAGGTACATATGTACAGTAGTTAACCGACataagaatataatataacCTAACATACTTATTTAACATTCACTTgctgtgaaaattaaattatttgctTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92619 lncRNA downstream 20910 9710646 ~ 9710996 (-) True G62568
TU92618 lncRNA downstream 22685 9708973 ~ 9709221 (-) True G62567
TU92617 lncRNA downstream 23712 9707773 ~ 9708194 (-) False fam78bb
TU92616 lncRNA downstream 28308 9703376 ~ 9703598 (-) True G62565
TU92615 lncRNA downstream 28715 9702959 ~ 9703191 (-) True G62564
TU92749 lncRNA upstream 263413 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 311034 10043188 ~ 10043398 (-) True G62670
TU92889 lncRNA upstream 322897 10055051 ~ 10057928 (-) True G62749
TU92911 lncRNA upstream 345263 10077417 ~ 10077652 (-) True G62768
XR_006251619.1 lncRNA upstream 395731 10127885 ~ 10150991 (-) False LOC122350767
XM_043247557.1 mRNA downstream 23285 9700394 ~ 9708621 (-) True fam78bb
XM_043247436.1 mRNA downstream 113780 9606505 ~ 9618126 (-) False edem3
XM_043247437.1 mRNA downstream 113780 9606505 ~ 9618126 (-) False edem3
XM_043247434.1 mRNA downstream 113780 9606505 ~ 9618126 (-) True edem3
XM_043247810.1 mRNA downstream 133543 9581828 ~ 9598363 (-) False zgc:92140
XM_043246023.1 mRNA upstream 54098 9786252 ~ 9837450 (-) False trabd2b
XM_043246021.1 mRNA upstream 54099 9786253 ~ 9837450 (-) True trabd2b
XM_043246020.1 mRNA upstream 54099 9786253 ~ 9837450 (-) False trabd2b
XM_043246022.1 mRNA upstream 54099 9786253 ~ 9837449 (-) False trabd2b
XM_043246019.1 mRNA upstream 54101 9786255 ~ 9837449 (-) False trabd2b
XR_006251623.1 other downstream 469080 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1074620 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1081941 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 1081941 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1302132 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 222596 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 229643 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 657029 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 708610 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 808065 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU70338 True 244 lncRNA 0.46 1 CI01000010 2985126 ~ 2985369 (+)