RNA id: XM_043246038.1


Basic Information

Item Value
RNA id XM_043246038.1
length 4172
RNA type mRNA
GC content 0.47
exon number 12
gene id mllt1a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9954681 ~ 9969485 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGAACCGTCTAGTTTCCGGTTTTGGGCTGGAATTGACACACAATGAGGAGTCGGGAGCAGCCGCTCAAAAGCCTTCTGTAAATAAACAGGACCTTCATCAGGCCGGCGAACTATGGAGAATCAGTGCACGGTTCAGGTAAAGCTTGAGCTGGGTCACAGGGCCCAGCTGAGGAAGAAGGTGACATCAGAGGGCTTCACCCACGACTGGATGGTGTTTGTGCGAGGCCCTGAGAACAGCGACATTCAGCACTTTGTGGATAAAGTCGTCTTCCGGCTGCACGAGAGCTTTCCAAAACCCAAGAGGGtgTGTAAGGAGCCACCATACAAGGTTGAGGAATCGGGATATGCTGGTTTTCTGATGCCTATAGAGGTTTACTTCAAAAACAAGGAGGAGCCAAAGAAGGTGTGCTTCAATTACGACCTCTTCCTTAACCTGGAGGGAAACCCACCTGTCAATCACCTGCGCTGTGAGAAACTAACCTTCAATAACCCCACTCGTGACTTCCGTCGCAAGCTCGTGAAGGCTGGAGGGATCATGGTGGTCCCAGAGGGAGCAGAGGTGGTCCCGAGACCCAGCCCAGATTATCCAATGCTTCCAACCATCCCACTCTCTGCCTTTTCTGACCCTAAGAAGAGCAAGACTTCACAAGGATCAAAgGAGCCTAGTAAGGAGGGAAGCAAGGTGTCCAAATCCCACAAAATGGCCAAGGAGCATCGAGAGCGGCCACGAAAAGACTCCGAGAGCAAAGCCACATCCAAAGGAGACGTTGAACGGGACGGCAGCAGCAAAAGTAGCCGTGACCCgtcctcatcttcatcttcgTCATCTAAGAAAACCGAGATCAAAGTGAAAGACGAGAACAAAGTCGTGCCCAAAGCTGCTTTCAAGGAGCCTAAACTGACAGCCAAGGAGACCAAAATGGAAGGCATGTCTCCTAAAGGAGGGGGGGCCGGGTCAGCGGGCGGTGGAGGGGGAGGTGGAGCGGCCGATGGAAAAGCACCCAGCAAACGACCTTCCAATGCGGAGTCGCCCAAACCTAGTGTCAAGAAGCCAAAGAAGGGGGGTTCAGAGGGGTCAAAAGGCTCCAGCAGTGGGGGGTTCACCGGCACCTCCCCCCGAACAGCGTCTTCCTCCACGGCCTCCTCGGGATACGCCGATAAGAAGGCCTCTAAAGAGAAGGGCCGCTGGGCCAAGGGCAAGTCAGAGACCCAGGAGGTCAAGGAGTCCAAGAAGCCTCCGGAATCCGATGACTCCAACTCTGATGATGAGGCCTCGTCTAAGTCTGAGCAATCAGCACCTTCCAGCCCATCTATTTCCAGCTCCAGCTCAGAGTCCAGCTCCGATTCAGACTTTGAGCCACAGCAGAAACAAGGCCAAGGCCCGCTGCGCTCGATGGTGGCGGATCTCCAGTCGGAGGAGTCTGATGATGACGATAGCAGCTCAGACGAAGAGACGCCAGTCAAGAACAACCTGCCCAGTCGAGACTCCAGGCTGAGTTTAGACAGCGAGAGTGACTGCAGCGACGGGCCGCAGCGTCCCAGTCGAGACCCGCCGCCCCAGCCACCGAAACACAGCACCACCAACAACAAGGTGTCAGGCAGAAAGAGTCCAGATCCTTGTTTACGACAAGAAAAGGTCCTGAAGAAGGGATACGACAAGgcATACACTGAAGAGCTGGTAGACCTTCATCGCAGACTGATGGCGTTAAGAGAGCGAAACGTTCTCCAGCAGATCGTGAACCTCATCGAAGAGACCGGCCACTTTAATGTCACCAACACAACTTTTGACTTTGACCTTTTCTCATTGGATGAGTCAACTGTCCGTAAACTACAGAGCTACCTGGAGGCCACCGCCACATGACAGGAAGTCCACCGAGACTGGGGGAAGGGGGGAGGGCTGCCCTTTTTCACTTCTTTTGTCCTGAGAGAGGGCTGCAAAAGGTGAAAATCTGTTCACAGGAAATGAAAACAGTGGGAAATAATGAAAAGGAGTGAAACGTACAGTATTTTGAGGAGGAAGTGCAGCTATGAATCAACACTACAACACTTCTTCTCTCCTCCTCAATATCCTGTTGGACAGGAAGTTCTCTTCTTAACGGGGCCAGATCTGCTGGAGGGTCATATTTGAATCAAccggaaagaaagaaagaaacaaacaaaaaaaaaaagtctcccTGTAGCCATACGCACTGATGCATCAAGGGTTGcaacctttttatattttatttttgtaccaaTGTTTTTCAAGGTATTTTTGATTGTGGTCGGAAAAAGGAAGCCCCGCACGCCATGAATGTATCGCTTTTTATCCTCTAGGGCTAGTCTTAGTGCCTTTTTCACACCATCTCATTTGTGCTCTTAGGAATTACAGCAGTGTTATCTTTTCACTCCGACTTTAGTCAATCCTTCTATATATGTGGGATCCCTGGATATCGTCCCGGGCAGATTCCAGTTTGTATGCCAATATGTATCAATCCTCATTTATGTGTTCGCCAAACGGGCCTTAGAACTTAAATGTTGTGCATTGCTAGTGCAGCTTGTGAAAGTATTTGGAAATCTGTGTTGatctctgtgttttctgtcatCATATCTGGTTTATTCATTAGACTAAGCGGGAGAGACAAAAGAAAAGGACGAGATGCGCTGTTTTCCTCTCATGTGGCCCCTGAAACAGCAGTCTGTCGATTCACTGTGCTTCTGACtccgactctctctctctctctctctctctgtctcagagCGACTATATCTCGACTTCACTGACTTCACCTCTGTGTCCATTGTTATGCTAATAGCTTTAAGAGGCTCCGTGGCCTGAGCTGCAGACCACATGCCCTTAACTTCACCCCGCGAGAGTCTGGCAGTGTCGTTTGCACAGGTTTTGAATCTCCAGTCGATTCGTCTGAATCTTAgagaacaaaaatgtttgtaacGGTGTACTGATTTAGCATATATGTGCGGctttcagcgagagaatgcttgaGTGTCATGTGCGTGAACTTTTGACTCCCAGTTCTTGGTGTGTGAACTTTAACCTTTGACCGGATACTGGATTCAGGTCAGCCTGTCATAAGGGGGTGGGACACCCAAAGGAGGTGGAGTTTGGTGAACTTGAGTGGCAGCTCTTAAAAGAGTGCGCCCCAGTcgctgttgctgtttttttttttttttttttattatttgagggggttattttttatttatgtacctCTGCACTTTTGGCTTTGTTGACTCAAGTACTTAATTgtctaaattgtatttttaatagttttatacaatatttacatgcaatatGATATTCATTTGTCAATTATTGTGTCAAGAAATGCCagtttttaaggatttttttttcctgtatcaGCACATTATCGTCATAGACTGTAAAGTGACCATCAGAACTTGAAACTGTTACTTCAGGCCAATTTATGAGTTCATGGCAGGGTGTGTTTGTATATCAGAGTTGAATTTCTACAAGTTGACAActagcatttgtttttgtttttttgtagccTCATTATCCACTACAAGGGGATGACTGCAGATTTGCAAAATGAACAAGtatttgttaatgtatttgatttaaacCGTGCTGAAAAGCTAGTCTTAGAGTGGTTGTGGGCACTTGTCACTCagttaaaccagctaagaccaggtggtttaagcttctttttttcagcagaaatGTGGAGAACCTCTGTTTTGTGCATGGGATGCAGCAAAGTAACACTAATGGCGAGGAAATTATTTCAGACAGTCATATTAAACAGATACACATGTATAGTAGACGGCGGGCGTCTTATTTACAGGAGTCTGAGGAAACATGAATCGACGGTTAATACTGCATCATTTTCACATACTTCGCTTGCAGGTTCAGAGAGCTGTCTTTTTGTCAGTCAGTGgtgattttatttgtgtttgtgagcgCGGAAGGACTTGCTGTATTTATCTGTGGGGTTTGGGGAGGTCTGGGTTTTTACGTATGTTCCGATAACGTGATAGAAAACCTTCCGTGATCCGAACAGAAGAGTAACCTTTAGTATGACGTGTTAAACTTGGCATACAATGCCACCATGTGGTCATTTGATGCAAGTTGTAATAAGGGCAAAAGatgttactttttatgtttttattgcaaaatcaTATTATGAATAAAGTCATTTGAGTACTGTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92632 lncRNA downstream 222527 9731906 ~ 9732154 (-) True G62576
TU92619 lncRNA downstream 243685 9710646 ~ 9710996 (-) True G62568
TU92618 lncRNA downstream 245460 9708973 ~ 9709221 (-) True G62567
TU92617 lncRNA downstream 246487 9707773 ~ 9708194 (-) False fam78bb
TU92616 lncRNA downstream 251083 9703376 ~ 9703598 (-) True G62565
TU92749 lncRNA upstream 26107 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 73728 10043188 ~ 10043398 (-) True G62670
TU92889 lncRNA upstream 85591 10055051 ~ 10057928 (-) True G62749
TU92911 lncRNA upstream 107957 10077417 ~ 10077652 (-) True G62768
XR_006251619.1 lncRNA upstream 158425 10127885 ~ 10150991 (-) False LOC122350767
XM_043246908.1 mRNA downstream 21670 9900496 ~ 9933011 (-) False rfx2
XM_043246907.1 mRNA downstream 21670 9900496 ~ 9933011 (-) True rfx2
XM_043246909.1 mRNA downstream 21671 9900496 ~ 9933010 (-) False rfx2
XM_043247781.1 mRNA downstream 98075 9852232 ~ 9856606 (-) True lpxn
XM_043246021.1 mRNA downstream 117231 9786253 ~ 9837450 (-) True trabd2b
XM_043246366.1 mRNA upstream 668 9970128 ~ 9976762 (-) True acer1
XM_043247334.1 mRNA upstream 10176 9979636 ~ 9995108 (-) True myo1f
XM_043247333.1 mRNA upstream 10176 9979636 ~ 9994898 (-) False myo1f
XM_043247335.1 mRNA upstream 10176 9979636 ~ 9988654 (-) False myo1f
XM_043247916.1 mRNA upstream 26087 9995547 ~ 10041769 (-) True adamts10
XR_006251623.1 other downstream 691855 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1297395 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1304716 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 1304716 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1524907 8429694 ~ 8429774 (-) True LOC122351130
TU92903 other upstream 419723 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 471304 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 570759 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 1017986 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 1127542 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile