RNA id: XR_006251618.1


Basic Information

Item Value
RNA id XR_006251618.1
length 4387
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC122350767
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10127885 ~ 10150991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgttttatttacatattaagtTTGCAACCGCCACGCGAACGTGACAAGTAACTAAAGTTTGTAGCACTTTTTGAAACAACGCCGAACTCCCGGTTATGGCTACGGCGCGCGATCTGAACCTTCTGCCGGGGAGGGAGCGCCTCTGTCGGTGTAGATGTCAAATTCATGCCGGCGAGCCTGCGGCCATTTTCTGCTGAGCAAACTGTACTGCTGGGCATCTGCCTCTGCTGGCTTTAAACTTCAACTTGGCCTTCTGAGTCCCGTGgttaacgcacacacacacacacctttttttcTTCGGCTGTCAGAGAACTAATAACTTTCATTACAGGAGAAAAGCCAAATCGCCTGGTAGCTATCTCAATCGTTGCGCGTCTCAATAGGGAAAATAACACGCCGGCGTTTGTAAGCCTTTCCCACAAAACCGTACGTTTGGCCGAAAACCAGCGAGAAAAGGAGTAACCGGCTGGTAAGAGAGAGGAAGCGAAGGGGAAACCGAAACACGGCGCCTGTGTGTTGATGATGATCTCATTTGACTTTAAGAGTGCACAACTCGTGATCTCCCTCGTCTTTTGGAGCAACGACACAATATTGATGAAACTGATTTGTTAACGTACCATTTCGAAGCGAAACCGCCAACCTCCCCCCCAAAAAGTTACAGCTTAGAGGCTTTTGTAGTTCTGCAGTTCAACGCCTGGTCATCTCGTCGGCTGCTTTTATAACTCCGTATCCATTTATCTTCGCAAAGAAGTAATCCGTGCTCTTCGGATGTGAGGAATAAACCCGGACACTGACCGAATGCGAAAACGTCCCACGCGAAGTCTTCGAGCCTCGTCCGATCCGAAATCCTCGTTACCAGagaacGTTTTGGGGTACGTATGCAACAGAAAGAGTGCCGCGTACAAGAAGGATCAAAGCATGAAGGGAAGGAGAgattgagtgagtgaatgagtgagaaCATGTGTGAAACATTTCTCAAACTGGGCTTGACAAACAATCAAAGACCTTCATTTGTGATTAGTTATTAGTAAAGGCTCATAGCAAATGTTAATTGCCAagttaatttaaacaaaagtgTGGGTGGCTAACGCAgtaaagagagaaaaggagggaggacagagaggaagaaagcAAGCGAGAGAAGGATAAAGGGTGGGCAATCACTTTTGTTATAACAGAGACGAAACAGGGAACAGAATCAATCCATTATCgatgaataaataagcaaaacCGAAGACTTGAACACTGAGCAAACAAAGAGAATTCCAACAGAAACTGGCTGAGAGAAGAAAAGAGCTCTCCAGATCTGGAGAAGACAGTAAGATAAGCTAAAACACAAAgcatgtgaaataaaacacgTGGACGGAATGGAGTTTAAACAACTTCAGGCGCTAATAATAatgtgaggaaaaacaaaatcagcCCAGAAGCAGGCTCAGACTGTACAGATTTTGCCATAATTGAAAATGATATTCAAAGCACTGTGAGGCAAAACAGCTCGATTTAATGCCACATGTCATTTtggaaacattaaaacaaagcGGTACGGACAGTTGTATCAGATATGTATTAAGTCAAAGCTAAGTGCttcaaaatcaagaaaaaaaattgataacctttaaataaaaaatgcctcCGTCTTCCACAATAAACAGAGAGAATATAAAGAATGTAAAAAGGagtcttacatttttaaatatttatttttaatattgaattatatatttaaaatgaatttatttattcatattaagtaaaattgccgctaaaaataaaagtcagtaAACTTGTTTCAAAGTCAAAAAATATCAGTAAAACGACAACAAATGACATCTAACTTCAGAAAATATGCTAAAGCAAAATAATGTCTTCGCTTCATCCGAACAACAGCGCTCAGCTATATTACCAAAGTCATCTGAGGTCACCTGCTCACCACACTACAAATAACACACCAGACCCCTCAAACAACTACTGCACAGCCAAATACGTCATTACAGCTGttcaaaaaaagttacatgCGTGCGAAAGCCTCAACAAGTTGTACATGATAAAGCGCAAAGTTAGAAGTTTCTTTAAAGTAGGTTAAATATCTCCACTCACCATCCACCAGGTCTTAGCTGTCATATCATAACACAGCTGCCATTTCACAGCGTTCTCTGCCGTGTTGCCACTCGTGTGTGTGATGCTGGGGAGCTCCATAAAGAGAGACGGATACaggaagcgagagagagagagaaaaggagatgTGGATGTTTTCAAACCAGCCCCAAACTCAGCCAAACAGGAGAAACAAGAGGAACAGACGTGCAAATCCTCCTCGGCTGCCTCTTTCTTGCTCTCATCTTTACCTCCCTGTGTGGCACAGAGAGAGACTGGACAGTttagagggacagagagagagagagcgtgaggGTGAGACCTAAAGGATTAAGATTTCGACAACAGTTCCCACTCAAGAGTCCACACTCTCTGAGCAGACCATCTGAGAGACACCCAGaccacaccaccaccaccaccaccacaccaccaccaccacggGCTGCTAGACAGACCAGCTAATGCCAGCTGTGTTAACAGTCGCACATACCCTCATAAGCGCACTCGCACAAAACCACACTTTTATAAAGCACATGTATGAAGAAAGTGGGAGCTGATGCCAAAAATCCTATGAGAATACATAGCGTGCCGCGTTCAAACGTGCTATTTTCTTTCTAGCGCAGCAGGGCGCTCACACACCCACTTCAACAACACAAAGTCAATCCTACGTCGAGACCTGACCACGATGATGTCATCCAGCAtcacttttttccttttgaccTTGTTAAATCACAAATTTCCTATTTGTGCTGCTGTATATTGAGGGATTGAAGAAGCCTAGGCTTCGTACAGTAGTGTATTAAGACCACCAGGGTAGAAACTGATTCTGTCTTCTTCATTACCTTTCGAGTCACACAGAGCTGaatagaaaataatagtttatgggagaagaaattttttttttttttttactgagagAATGTggaaattaaatgtgttttttttttttttttttttcccaccaccTCCATCAACCACATAGCAAGGAGAAGTCCAGCCCTTGCTTGGCCGCAGGAGTGCTGAGTGAGTGTGGGGGATATGTGGGCAGTGTTTGTTTGGCTtacttgctttttcttttccttttttcatgttggaaatttttgtttttatcatgcATCAAAGGACTAAGTGTCAAAAGTCTCCTCACAGCTCCCCACACACTTCACATCGCAGATCCAAAACACTGTTgagattaaaaatatgaatacgaTTATTTTTATGACAGTACGTgccactgaaataaaatattacggTATAAGTCAAAATGCAGTGCAAGAATTCCTTCAATTCAAATTAAGAGATGTTTAGAAGGTggagagaaaacaacaaatttGAGCCACATAATtgaatatttcatacatttggttgtaagtacttaaaaaaattattaagatTGTCTCACTGACCGTTGGAAGCAAAGCGGCCTGGCTCTGATTGGAAGCAGCTCAAAAGGTGTGTCGTAATCAGAAACAGAATTGGACGTTCATTTATCGTCGGCGACTGGACAACACCATCCGAAGTATCCATCCACCATCATGAGAACGGATATGGCCATCTGTAACTTAAAAGGTAGTAAACTATTAGTGTTTAGTGGAacatagccttttcagtgtgtcaCGCTTCCTCCAACTCAAACACAGCTTTTATGCGCCTATACAGATAATTTAACCTGCTTATTAGTTTACCTGTCAAAAAGAAACTCTGGAAATTGTCATATGGAGTGAAACATCTCGTAAAATTTCCAGAAATTGTTGTATGGAGTGAAACCGCTCATAAAATTCTTCCATCTGTCAGTGTTTACCCTTGTTTTACCCTGTTGTCTGTCTCAGTCATTGTATATTTGCTTGCAGTTTATGTGAATTTCTTTGTCCACACCCACTCAACACCCCCTGGCTCAGCCGTCGCAGTAGCCACACCCCAAACTCTCGCTATTGGATGCACGGAGGTATGCAAATACATTGATTGACTAGCAGATCTACATGAGATCACCTGATAGAAGGCAGTCTCAACGAGCCAGTGTTTCCACAGGAGCAGGGGTCCGGAGAACTGGGAAGAGCCGGGGATGGAAGTCTGGGATTTCCCAGTCTCTTCACTCTCCTGAGGCTGGACTCCTTCCTCCTTAGTGCCCAGGTGAAAGATGACAGAGAATCCAtaccattttataatattttccaTGGAAGgacaggtttggagcaacacaatttttattttggggtggacaATCCCTTTGGCTCCGATTACTCACTCTGAATGTGGGAACATCAACCCAGCCCAGACTCTGGGAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92911 lncRNA downstream 50233 10077417 ~ 10077652 (-) True G62768
TU92889 lncRNA downstream 69957 10055051 ~ 10057928 (-) True G62749
TU92768 lncRNA downstream 84487 10043188 ~ 10043398 (-) True G62670
TU92749 lncRNA downstream 130401 9995567 ~ 9997484 (-) False adamts10
TU92632 lncRNA downstream 395731 9731906 ~ 9732154 (-) True G62576
TU92936 lncRNA upstream 1248 10152239 ~ 10152905 (-) True G62788
TU92937 lncRNA upstream 5984 10156975 ~ 10157193 (-) True G62789
TU92941 lncRNA upstream 94205 10245196 ~ 10248121 (-) True smim24
TU92943 lncRNA upstream 99642 10250633 ~ 10253256 (-) True G62795
TU92944 lncRNA upstream 99642 10250633 ~ 10252235 (-) False G62795
XM_043247916.1 mRNA downstream 86116 9995547 ~ 10041769 (-) True adamts10
XM_043247917.1 mRNA downstream 98295 9995547 ~ 10029590 (-) False adamts10
XM_043247334.1 mRNA downstream 132777 9979636 ~ 9995108 (-) True myo1f
XM_043247333.1 mRNA downstream 132987 9979636 ~ 9994898 (-) False myo1f
XM_043247335.1 mRNA downstream 139231 9979636 ~ 9988654 (-) False myo1f
XM_043246026.1 mRNA upstream 94870 10245861 ~ 10248156 (-) False smim24
XM_043245989.1 mRNA upstream 102899 10253890 ~ 10256950 (-) True dohh
XM_043246080.1 mRNA upstream 106154 10257145 ~ 10259192 (-) True LOC122349939
XM_043247660.1 mRNA upstream 113850 10264841 ~ 10271997 (-) True haus5
XM_043246948.1 mRNA upstream 129312 10280303 ~ 10284362 (-) False si:dkeyp-82a1.6
TU92747 other downstream 158400 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 166184 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 865059 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1470599 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1477920 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 238192 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 289773 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 389228 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 836455 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 946011 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile