RNA id: XM_043246026.1



Basic Information


Item Value
RNA id XM_043246026.1
length 1165
RNA type mRNA
GC content 0.40
exon number 3
gene id smim24
representative False

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10245196 ~ 10248156 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGATTTTGTACTTTGGACACCAAGAATCCTTCACATATTTACAGACGACTGAGAGGAACGCAGAATTGCGTGCGGACTGTAAATTCATCATGTCTCATCTACAGAATATAGTTGCCTTCATAATAATCTCTGCCTCCATTTGTCAGGCTCAAGCTGGTGGTCAACGGGCATCATCAGATACAGCTAAAGTCACGTTACAGCCGTGGCTGGTGGGACTGACAGCCGTTGTCGTTTTTCTCTTTGTTGTCTTCGTCCTCCTCATCATGCAGAGGCTCTTTTTCAAGAAAGACAAACATGAGCTGGAAGAAAGCCATTCCTTTTACGAAAACAAAGCAGCTGATCTGGAGGCATTCGAGGAGACCAAGCAGACCACTTTCTAATGAGAAGAACAGATGATCACGGTCCTGCAGCACAcaaatctttctctctctggaaATCATGCCACAACTGGCATAGAGTAATTATCATATACAATCTTATGTAATATATCTTTTTAACTTATTGATTTAATTACGTTTTGTCTTCATAAGTGTTGTTCCTCACATCGTCCACTAGATGGAGCAGCACTCACCTAGTCACAGCTGTAACCTTTgcgattgattttttttggcgTATTCTCAATACACGTTTTACTACTTTGCTGTAACTTAggtaacatttaaacattcattagGGTAATGAGAGCATTGGAATTGAAGAGCACACACTCAGGGAGTCACATCATGCACATAATGCTCTGATTAACCGGCTTTTGACTCGTATGACATGGGTTCTGCATGCATATATGCTAAATGGACATGGGTATGAGATCCATTACTCATTTTGACTGGCGGTTTGGACATGTTAAATGCTTCCAGTCAAATGATGTAACGcagttttgcttttgaaacCATTTGCTCGTCTCGGGGGGAATTATATGATGAAAATATCATTCGCAGAAAAAATGGCCAGGTGTTCAAATGTGTTAATGATGGAGACCATTACGGTTTAAAGTATACAGCGTTAAAGTTAAAGTAGACTTTGGTCTGGTGTTGCCTAAATGATTACTAAGACTGTTGAGCGGTTAGTTATGATGTAATAAACTGCCTAACGCATGCTTTTTATATTGATGTGGTTCCTCCCTTCGTGATTAAATAAAAGCTCATCTTTGGGTTAAATGGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92937 lncRNA downstream 88668 10156975 ~ 10157193 (-) True G62789
TU92936 lncRNA downstream 92956 10152239 ~ 10152905 (-) True G62788
XR_006251619.1 lncRNA downstream 94870 10127885 ~ 10150991 (-) False LOC122350767
XR_006251618.1 lncRNA downstream 94870 10127885 ~ 10150991 (-) True LOC122350767
TU92907 lncRNA downstream 106981 10134732 ~ 10138880 (-) False LOC122350767
TU92943 lncRNA upstream 2477 10250633 ~ 10253256 (-) True G62795
TU92944 lncRNA upstream 2477 10250633 ~ 10252235 (-) False G62795
TU92949 lncRNA upstream 15662 10263818 ~ 10264761 (-) True G62800
TU92955 lncRNA upstream 53506 10301662 ~ 10301885 (-) True G62805
TU92967 lncRNA upstream 77585 10325741 ~ 10327208 (-) True G62817
XM_043247916.1 mRNA downstream 204092 9995547 ~ 10041769 (-) True adamts10
XM_043247917.1 mRNA downstream 216271 9995547 ~ 10029590 (-) False adamts10
XM_043247334.1 mRNA downstream 250753 9979636 ~ 9995108 (-) True myo1f
XM_043247333.1 mRNA downstream 250963 9979636 ~ 9994898 (-) False myo1f
XM_043247335.1 mRNA downstream 257207 9979636 ~ 9988654 (-) False myo1f
XM_043245989.1 mRNA upstream 5734 10253890 ~ 10256950 (-) True dohh
XM_043246080.1 mRNA upstream 8989 10257145 ~ 10259192 (-) True LOC122349939
XM_043247660.1 mRNA upstream 16685 10264841 ~ 10271997 (-) True haus5
XM_043246948.1 mRNA upstream 32147 10280303 ~ 10284362 (-) False si:dkeyp-82a1.6
XM_043246947.1 mRNA upstream 32147 10280303 ~ 10284362 (-) True si:dkeyp-82a1.6
TU92747 other downstream 276376 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 284160 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 983035 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1588575 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1595896 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 141027 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 192608 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 292063 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 739290 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 848846 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile