RNA id: TU92973



Basic Information


Item Value
RNA id TU92973
length 1057
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G62821
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10370333 ~ 10373331 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGATACACAATATGCTTTCTACAAGAACTCATATTTCTAatcattttttcagaatttaagaAACATTGAGATCATAAcatctataaaaataaagctgcatCAGCTGATAATGAGACTGCAGCTTTATGACCACTGCTGGCAGGATGAGACtgtaaaattatgcaaaaaatttaCAACATCgaaaataaaagctttcaaCCTTTTATTAAAGCAACATGTTGTGACTTTGCCCTTTCTTTTTTAGAGTTGGAACAACTGTAATAGTATATTCAATAGCCTGCTTATATGGTCATCAAATTGTGTCAACTCGTATTACAGGTTTAAGCAACAATAGGGTTCATTTTCATTGGAACAGGatgtacacaaatatataaacgctgattttttttccaacagcATGACCTCAATATCAGTTTCTGAACCTCAGTCAAATGTAAACAACATAAAGTGACATAAGATTGGGAGATCAGTTGTAATTGTTATACATGTCAAGGTTTTTCAAGTTGCATAACGCATCACACAATAACACCTAGATAGAGATAGTTTTTTATGTtagttttgtattaaatattgacCGTGTTTGTACTGTTTAGCggtcatattaaaaaatatgcataaagtCAAAGCATATGATTTTCTTATGCTCAAAACTAACAGACTTGCTTGATGGGACGAAGTTATACCTTCTTTTGTTGCTAAAACAACTGCACCCACCTCCACCTGTTGACCCCAAGGTTAGACGACCCAGCGAACCAGGGATCCAGGAAGTAGACACATCGAACAGTGTCTGCCCCACGTACTGCCTCCTGAAGTGCAGGGTTGTCATGGAGACGGAGGCCCTTCCGGAACCAATGGATGGAATTTGGGGCCATGTTCACTGAGTCaccTTTAACCGTTATGTCAGTCCCGAAGACAGTATCATCTCTTCCCACGAGACAGCGATATTCTCACAGCTGAGAAACTGTACTGTTCCCCAATTCGGTCTGGCGCACAGACGGTCAACTTGACTTCATGAGACGCTCGTGCGCTGCGCCTGCTCTGTTTAGCTCTGCTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92967 lncRNA downstream 43125 10325741 ~ 10327208 (-) True G62817
TU92955 lncRNA downstream 68448 10301662 ~ 10301885 (-) True G62805
TU92949 lncRNA downstream 105572 10263818 ~ 10264761 (-) True G62800
TU92943 lncRNA downstream 117077 10250633 ~ 10253256 (-) True G62795
TU92944 lncRNA downstream 118098 10250633 ~ 10252235 (-) False G62795
TU92977 lncRNA upstream 8386 10381717 ~ 10443630 (-) False G62824
TU92982 lncRNA upstream 8386 10381717 ~ 10443630 (-) True G62824
TU93013 lncRNA upstream 10389 10383720 ~ 10484599 (-) True G62829
TU92996 lncRNA upstream 10649 10383980 ~ 10484599 (-) False G62829
TU92999 lncRNA upstream 10649 10383980 ~ 10484599 (-) False G62829
XM_043247531.1 mRNA downstream 31664 10329776 ~ 10338669 (-) False gls2a
XM_043247530.1 mRNA downstream 31664 10329776 ~ 10338669 (-) True gls2a
XM_043247452.1 mRNA downstream 49960 10316425 ~ 10320373 (-) True cpt2
XM_043247453.1 mRNA downstream 49962 10316425 ~ 10320371 (-) False cpt2
XM_043246944.1 mRNA downstream 70027 10298359 ~ 10300306 (-) True tmco1
XM_043246165.1 mRNA upstream 114459 10487790 ~ 10491200 (-) True LOC122349990
XM_043246120.1 mRNA upstream 153016 10526347 ~ 10528717 (-) True LOC122349964
XM_043246124.1 mRNA upstream 156112 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA upstream 156112 10529443 ~ 10533338 (-) True LOC122349966
XM_043246747.1 mRNA upstream 453098 10826429 ~ 10961990 (-) True LOC122350349
TU92747 other downstream 400848 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 408632 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1107507 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1713047 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1720368 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 15852 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 67433 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 166888 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 614115 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 723671 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile