RNA id: TU93000


Basic Information

Item Value
RNA id TU93000
length 2146
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G62829
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10383720 ~ 10484599 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCAATTCAAATGGGGAGAAAACAGAAATGGTTCACTTCTTCCGcagtgacaaaaacaaactataataGCACAGAGATATTACAGTCAAAAAGCACTGAGGTTTCTACAATTGTCATATCAAAACATTCACATTAGAACTGAACACTTCTCCTGGTCGGCAAAAGCAATACAGATGTCACTGTGTCAAAGCAGATCCAGCtatacaaacacaaattcaGACCCGACAGCTTTAGTCCAGTTCAGTAAGAGGTTGCCAGATCACCATGATAAACAACCACACATGAACTCAAGGGCCCATATCTTTATATACATGGTCTAGTTATGCACAATACTTGTGATTAGAACATCTGTGTTTGTGATACTGTGAACATTGTAGTGGATTCATCAGAAGTCTCAGTTGCTGTGGCTGATATTCGTcagcactgaataaaaaaaaaaaaacaatatcaattttttttaagaatgagATTTTTCTTTAGACAGCACATATTGccaaatttcaatttcatttaattgatcaaagaggcgtatatttgtacttttacaaTGTTTATATTACTAtgactattattactattatttcttGGCAATCTGGTGTAATACCAACAGCTATTAAATATTTGGTCAGTAGGGGCATTTGGTATAAAGCATGTGTTGTCAAATACAGAGACTAAATATTTGCACAATCCTAATGATctattatgacaaaaaaaaaaagtgattgagTCAATGTTTTGGGTATTTCTGGAATGTCAGACAATGTAAAAATCTGATGTAAAGATTTACACTAGCAGATGATGCTCTTGCTTGTTTACCTGAACATGCACAAACagatgaatttatttaaaatatccgtgattttttttaaatagaaaatgcatgtataatCTGCTAAGAAGTCTCAAGGGTCAGAAATACAACAGGGTGCCTTCATTTCCATACATTTCCTTCTTAAAGATCCGTAAAGCTTTATTTCATGGATGTACTGTAGAGATCAATGATGAGCTAGGAAAATGTTCTTTTCCAGTGTCATTTCCTGGCTTTGGCAGAGTTTAGGTTGGCgtttttatcagtgtttaaGGCCTGACCGTGAAGatcagctgtctgtgtgtgtctgccaaGCATGACAATGAAGAAGATACTGCAGCTAATCTACAGATACATTTAACAGGCCATTCTAGcccatttaaaaacattcaagaaCCGCATTCCTCCGCAGCTCTGTCCCTGATAACAATTTTACAAACGGGTTGAAGGTTAAAAACATGGATTTAAAATCAGTTAAGCGGTACCATTTTATGGagatgattttaaaatctagAAATCTTCAAAccctattttaaaatgtcagctCTGCTggtaaattttatatttatttatttatgaattttctGAGTAAACACTAATACATTGAACTGGCAAAGAACGAAACaccaatatataaaatatacctgTATAAATTTTTCTGTTTACAAAAAGTGGCATGTACACCACTCTATGGAGAATCAGTGAAATTGTACAATGAGAAAATGTTggagaaaatgtacaaaagtgtTGTGTGATGGTTGTAGTTTGTGGTttacaaactgtaaaaatttCACAAATCTTAGCTGCGATGAGTGTACAATGAGAAAATGTTGgagaaaaatgtacaaaagtgtTGTGTGATGGTTGTAGTTTGTGGTttacaaactgtaaaaattCTCACAAATCCTAGCTGCGATGAGTGTACAATGAGGCTTAGCTTTATCGTGCTTGGTAAAAGCTGATAAATATTACTCGGTATGGATCACTTGACAGTAAATAAAACCCTAAACTGTGCAGAGATGggcaaaagagaaagaatgaaatgGGTTTACCGAGGAAAAATCTTTTTATGGCTGTTTTTGTCCGTCAATGGATGTGAAATCATTAACTTCTTTTTAAAGCAACTCAATTTCATTCAacgataaaaataaattctcagttaatatttatatcaattGAACATgtaagaaaaaggaaaagagatgggggaaaaacagctgaaaaaaaaaaaaactaaaaatacaacaatcCCCAAACATGAGTTGTTTAAAGGAAACCAGATTTAAAGTCATTCCACTTGTTTTGAATCTGCTTCTGCTCAGTACCATGATATGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92973 lncRNA downstream 10649 10370333 ~ 10373331 (-) True G62821
TU92967 lncRNA downstream 56772 10325741 ~ 10327208 (-) True G62817
TU92955 lncRNA downstream 82095 10301662 ~ 10301885 (-) True G62805
TU92949 lncRNA downstream 119219 10263818 ~ 10264761 (-) True G62800
TU92944 lncRNA downstream 131745 10250633 ~ 10252235 (-) False G62795
TU93028 lncRNA upstream 36060 10520659 ~ 10522487 (-) True G62835
TU93067 lncRNA upstream 211736 10696335 ~ 10698125 (-) True G62861
XR_006251661.1 lncRNA upstream 270790 10755389 ~ 10799963 (-) True LOC122350960
TU93074 lncRNA upstream 271055 10755654 ~ 10756006 (-) False LOC122350960
TU93075 lncRNA upstream 271934 10756533 ~ 10756912 (-) False LOC122350960
XM_043247531.1 mRNA downstream 45311 10329776 ~ 10338669 (-) False gls2a
XM_043247530.1 mRNA downstream 45311 10329776 ~ 10338669 (-) True gls2a
XM_043247452.1 mRNA downstream 63607 10316425 ~ 10320373 (-) True cpt2
XM_043247453.1 mRNA downstream 63609 10316425 ~ 10320371 (-) False cpt2
XM_043246944.1 mRNA downstream 83674 10298359 ~ 10300306 (-) True tmco1
XM_043246165.1 mRNA upstream 3191 10487790 ~ 10491200 (-) True LOC122349990
XM_043246120.1 mRNA upstream 41748 10526347 ~ 10528717 (-) True LOC122349964
XM_043246124.1 mRNA upstream 44844 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA upstream 44844 10529443 ~ 10533338 (-) True LOC122349966
XM_043246747.1 mRNA upstream 341830 10826429 ~ 10961990 (-) True LOC122350349
TU92747 other downstream 414495 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 422279 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1121154 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1726694 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1734015 8647281 ~ 8649965 (-) True mrps36
unassigned_transcript_1293 other upstream 55620 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 502847 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 612403 11097002 ~ 11131207 (-) False LOC122349915
TU93259 other upstream 839305 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 1077679 11562278 ~ 11564405 (-) False G63095

Expression Profile