RNA id: TU93256


Basic Information

Item Value
RNA id TU93256
length 556
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G62992
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11276359 ~ 11276914 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTCATTCAGAAGGTATGGCTCCACCAGCTGTCCGAGGGGAGGGGAGGGTGGAGGCACAGGTGATCCACTGCTTGGGTAAGATCCTCTGTCCCCATTCAAGAAGTTTTGGAAGCTGATGTCGGTCTGGGTGCCGTTGTCCACACAGTCTGTGATAGCCATGAGCCGAGGTGTGCCAGCGGCTGCACCCAATCTTCTCCTGTGACCCTTACATACCACTTGAAGAAGCAGAGGATCATGAGGCTGCCCATCTTTGTCCTGGGACAGATGAGATGTTCTTCTGCCTTTGAGCTGCAGTGAGTGAAAAGAATGCCATTGAatgtccatttaaaaaaataatgcacttaTTGGTTGTTTTATGTGACACTTCTGAAAATGCTGAAGCAGCACTATGGAGAGAATGAAGTGGAgaaagagggagacagagataagaaaaatgagagaaggagagagagggatgataaatgcacaaataagcAAAACTCAAGGAAGGTTGTAGTTCTGCTCCTCCTTGGTGAGAAGTAACATTGCAAAGCAGCAAAAATGGCTATTGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93238 lncRNA downstream 66198 11201695 ~ 11210161 (-) True G62977
TU93235 lncRNA downstream 70986 11197153 ~ 11205373 (-) True G62974
TU93215 lncRNA downstream 106886 11131670 ~ 11169473 (-) True smim1
XR_006251671.1 lncRNA downstream 451308 10819217 ~ 10825051 (-) True LOC122351000
XR_006251661.1 lncRNA downstream 476396 10755389 ~ 10799963 (-) True LOC122350960
TU93312 lncRNA upstream 130040 11406954 ~ 11441818 (-) False G63014
TU93307 lncRNA upstream 155867 11432781 ~ 11441818 (-) False G63014
TU93310 lncRNA upstream 155867 11432781 ~ 11441818 (-) False G63014
TU93299 lncRNA upstream 160832 11437746 ~ 11441996 (-) True G63014
TU93371 lncRNA upstream 246108 11523022 ~ 11523638 (-) True G63065
XM_043246231.1 mRNA downstream 19851 11250881 ~ 11256508 (-) True porcnl
XM_043247996.1 mRNA downstream 25776 11235474 ~ 11250583 (-) False csde1
XM_043247995.1 mRNA downstream 25776 11235474 ~ 11250583 (-) False csde1
XM_043247994.1 mRNA downstream 25776 11235474 ~ 11250583 (-) False csde1
XM_043247993.1 mRNA downstream 25776 11235474 ~ 11250583 (-) False csde1
XM_043246617.1 mRNA upstream 7440 11284354 ~ 11345988 (-) True LOC122350269
XM_043246404.1 mRNA upstream 74390 11351304 ~ 11392669 (-) False magixa
XM_043246402.1 mRNA upstream 74390 11351304 ~ 11392669 (-) True magixa
XM_043246405.1 mRNA upstream 74390 11351304 ~ 11392668 (-) False magixa
XM_043246403.1 mRNA upstream 74390 11351304 ~ 11387953 (-) False magixa
TU93213 other downstream 145152 11097002 ~ 11131207 (-) False LOC122349915
TU93206 other downstream 285655 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 736068 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 797674 10440764 ~ 10478685 (-) False G62826
TU92903 other downstream 884316 10389183 ~ 10392043 (-) True G62760
TU93259 other upstream 46990 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 285364 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 285364 11562278 ~ 11564405 (-) False G63095
TU93426 other upstream 285364 11562278 ~ 11564405 (-) False G63095
TU93692 other upstream 501357 11778271 ~ 11779251 (-) True G63274

Expression Profile