RNA id: TU93422


Basic Information

Item Value
RNA id TU93422
length 1786
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G63095
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11562278 ~ 11615925 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGAAAACATGGAAAAGATGGAAAATAATAAGTTACTGTCAGTCCATAATGCAAATATAACCCCAGTGGATAAATCATTGTCTTCTAATGTAAAATTCTATATAAGtgaaatcatattaaaaatatatatatcaataggtcatattttaaatgataaactgTTGCTCTGTTTGTCAGCTGTCATATGTGGATATCTGACATGCAGGCCTGCCCAACCTAACATTATCAAATTCTGTCTTCAAAATTAGGATTCAACATACACCTGATACAGCAATCTGCTACAGATAATTTTCTACTTTAGGTAGCACAAACTGACCTTCAAAATTGGTTTAGAGATTTGTTTAAATTGGACTTGATATAGGTCACGGTTTCtaaaacaatgttatttttggCCAATAATCTGCTTTTAAATATATGCCACATTTCTATGATTAGCAACAGATATGGGGGGAATTAGTATTAGAAGTGtgcaaaaatatcttttaactTTCAATTATTTGCCACTAACACAGTTCTGCAGATAAGCATGTTGCAGTTAGTATCTAAAAAACTTTTCTGccacatggaaaaaaaacaacagcttcaGTTTCTTGCTGCCACATGTAGAATAGATGCATCCAATGACAGCAGGTGTAGTGTTATATAAAGCGTATTAGTGTGTCCTGTCTTAGCACATGTGTTTTAATCTCACCAAAGCCTGCTTAATTCTAAACATCTTGCACACGGGCTGTTGTTCAGCAGCTCATTCTCTGTAAAACAGCGGAGTCACTGAATAGAGACTGTTTAGGGCTAATCCCCGTATGAGAGTACATTGATAGCCTAATTGATTTACCATAATATAATCCATGCTAATGGAACTcaatatgatcatttaaaaaaaaaaatgtgtaagaaCAGCAGGAAGGAGGAATAGAAACTATCACACCATACCATAGGCTGCagttagtcatttatttatagcaaatatAATTGCAAAGTGCACCCAGTGATACAGTGACTTACATTAAGATACTCAGCTCATATGGAAAGCATATTTTTGCCATGTTGTTTTGGtcataggtaaaaaaaaacagcactacACAGCATGACATAAAAAACAGCcagtttttactaaaaataaaaatggagcCTCCGTCGCCTGCTTCTACCCACGGTCACTCCTGGATGAGGGGTAAAGGGTGTGGAGTTGGGTCAGGATGGTTATGAGGGGACGGGGGATACAGGCTCCTTCCCAGAGTCACTGCTCTCACTCATTTGCCTCTTCATCACAATCTCTCGGGCAACACAGGTCACCTGACCGTTTGTCACCGTGTAGGTGCCAGCCCTGCCAACTTCTGCTGGGATTCAAATCCATTGAGTGTCCCCATTTGATTCTGCTTCCCAAAGAAGAAACTGGACCACCAGTGGCCAGAGTCCTGTCGTGCAAGACCTGGGGTGTGGAATGACCTCCCCAGAGTACTCCGAACTGCCGCAGGAACTGTTGCTGGATGTAGATCCTATGCCTTCGGTAGTAATCATGGGTGGCAATAAGGGAACCGCTGGATGGAATCGCTGCCATTTTCCCCGTCCTCAAAGTTTCAACCGTGTGAAAGATGGAAAGATCTGTTTttggtgAGTGCTGATGTTGGTAATGCACCAAAAGCAAAGCTTGGTCGGGTAAACGCTAGGCGACGGGGCCCATTTGTAGTTTGGTTCTTGGGTGAGACCCTCCAAGGCCTTTCGCTCCTCCGCTCCCAATTCTACTGCATGTAGGGCGCATGGACTATTTATTACTTGAGTGACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93389 lncRNA downstream 645 11560987 ~ 11561633 (-) True G63076
TU93388 lncRNA downstream 719 11560987 ~ 11561559 (-) False G63076
TU93382 lncRNA downstream 4999 11554050 ~ 11557279 (-) False G63075
TU93386 lncRNA downstream 4999 11554050 ~ 11557279 (-) True G63075
TU93374 lncRNA downstream 16829 11543989 ~ 11545449 (-) True G63068
XR_006251589.1 lncRNA upstream 55109 11620447 ~ 11621205 (-) True LOC122350252
TU93463 lncRNA upstream 83171 11648509 ~ 11651904 (-) True G63120
TU93470 lncRNA upstream 98097 11663435 ~ 11664774 (-) True G63127
TU93477 lncRNA upstream 101828 11667166 ~ 11667480 (-) True G63134
TU93660 lncRNA upstream 255946 11821284 ~ 11823244 (-) True G63254
XM_043246486.1 mRNA downstream 58246 11481644 ~ 11504032 (-) True si:dkey-70p6.1
XM_043247378.1 mRNA downstream 110832 11445273 ~ 11451446 (-) True emilin3a
XM_043246406.1 mRNA downstream 169607 11357175 ~ 11392671 (-) False magixa
XM_043246405.1 mRNA downstream 169610 11351304 ~ 11392668 (-) False magixa
XM_043246480.1 mRNA upstream 4210 11569548 ~ 11575213 (-) False ptk6a
XM_043246479.1 mRNA upstream 4210 11569548 ~ 11575195 (-) True ptk6a
XM_043246446.1 mRNA upstream 13824 11579162 ~ 11615271 (-) True nol4la
XM_043246525.1 mRNA upstream 109936 11675274 ~ 11683625 (-) True gpr173
XM_043246489.1 mRNA upstream 177801 11743139 ~ 11747881 (-) True wasb
TU93259 other downstream 216420 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 431071 11097002 ~ 11131207 (-) False LOC122349915
TU93206 other downstream 571574 10987446 ~ 10990704 (-) False cep104
unassigned_transcript_1293 other downstream 1021987 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 1083593 10440764 ~ 10478685 (-) False G62826
TU93692 other upstream 212933 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 231792 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93842 other upstream 698356 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 785908 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 2244090 13809428 ~ 13863250 (-) True G63933

Expression Profile