RNA id: XM_043246021.1


Basic Information

Item Value
RNA id XM_043246021.1
length 3835
RNA type mRNA
GC content 0.44
exon number 7
gene id trabd2b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9786252 ~ 9837450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGGGGAAACATTCAAGGCGTTCACGTTCTCCGCGCAGTTAAACTGGAAAGTTGAGGGGCGCAGCGTAGAGTTTGTGCTCTCCACAGCTGGACAGCTggagagagtgacagagagagagagaaagagagagagagagggagagagagagagagagagatacgaCGCGAATCCCTTTGAAAGTCCGGGGCAGGAGAATGGCGGAGGGGCAGAATGCTTTCCTTTCGAGACGGCAAATGTGAGCCCACAATTATCACCGGCGGAAAACAGTTTATTTGCGCCGTGAGGCCAGGAACAACTTTTAAACAACAGAGGTAACGGAGCCGAGGGAAGCACGAGGTGTCCTGCGCCCTCTCATCTCGAAATGAACTGTCACTCGGGACTACGATGGTTGGTAACTTTATGCGCTTTCTTTCAAGTGGGCTCACCCCGGGACACGCACCAGAGCACGCGGAAATGTGACAAGCCCGTGTCGAAAGACATGAACTCCTTCCTGTGGACCGTTAAACGGCCTCCTCCTCACGCTCCGTCCTATCTCTTCGGGACAATCCACGTCCCGTACACTCGAGTTTGGGACTACATACCCGAGAGCTCGAAACGGGCCTTCCAGAGCAGTGCCAATGTTTTCTTTGAACTGGATCTCACAGATCCCCTAACCATCTCAAAACTCACTAGCTGCCAGCTTCTCCCCAACGGAGAAAACCTCCAGACGTTACTGCCGCGTGATCTGTACCGCCGACTCAAGCGCCACCTGGACTACGTCAAACACATGATGCCCTTCTGGATGACGGCAGACCAGCGTGGCCGGGGACTTTATGCAGACTACCTCTTCAACGCCATCGCAGGGAACTGGGAACGCAAGAGGCCCGTTTGGGTGATGCTGATGGTGAACTCGCTGACGGAAGCAGACGTTCGGTCGCGGGGAACGCCGGTGCTAGACCTGTTCTTGGCGCAGGAAGCCGAGCGTCTCGGAAAGCAGACAGGTGCTGTGGAGAGGGTGGAGGAACAGTGCCATCCTCTGAATGGACTGAACTTCTCACAGgtgTTGTTTGCTCTAAACCAGACTCTACTGCAGCATGAGAGTTTGCGTGCAGGCATTCTGCAGGACGCCTTCACTACTGAGGACCTCATCACACACTACAACTGTGGAGACCTCAACTCCATCATCTTCAATCATGATACATCCCAGcttcCGCACTTCATCAACAGTTCCCTGCCAGCTCACGAGCGCATGACGGCGCAGCAGATTGACAGTTACCTGCGACAGGAGCTCATTTACAAACGCAATGAGCGAATGGCCCGCCGCGTCTCCGCGCTCCTTCAGAGAAACCCCACCCAGAGCTTCTTCTTCGCTTTCGGAGCTGGTCATTTCCTGGGGAATCACAGTGTACTGGACATCCTGCGCCAAGAGGGCTATGATGTGGAGCACACGCCAGCACAAGAGCCCATCACACAAAGGAGCGGGTCTGAGGTGGAGGGGACTACTGTGAATCCCGCTGAAGGCAGCTCTGAGTCAGTGACGGAATGGACATCAGAAGCTCCGGAGCTAGATGAGATCAGCCAGGAAGAACTCTCCCACATGCTGCTGCCAGACAGTCTCAGACAGCTAGAGGAGTTTGGCCGCTACAAGCGCCCCCGTAAAACCCATCATGCACACGGTCGACCACGGCTGTTCAGTGACCTGTGGGTGCGCATAGGAGACAGCACGACTCCAAACTCGAATATAAGGATAACCAATGGCTATGTGACGGTAGAACCTCCTCGAACACGACAGGTACAACAGCAAAGACGAACGCCGCTCCGAGACAGACCGAATCAGCCCAGCCATCCCACAAACCCCAGCGCACTTGACTTCGCCGCTCCAAACTCAACATATGCGCTGACTTGCCTTTTAGCCTGTCTCATTTCACAACTGCTTTTCACTTCCTGAAGAGGGAAATGGGTCTCTTGGAAGCTCACAAACCAACTCAATCAGAATTTTATCTGAGTGACTTTGCctgtggtaaaaataaatggcagTGAAGTACATTTAGGTACTGCTTAGATCGATTTTGGGTGTCTGCCTGCAGTAAATTAGTTGCCGCAGAATGTAACAGTAGACGTATGTGAGTAATTTCTAATTGTTACATCTGGCAGGATGGTAAGAATAACAATAAGggaaaaacaagaacattttgttATACTTTTGCAATGACTCTGCCCAGAGATGATTCATAAGAATCGGCTAAGATTATACCTTTTTATGTGAATACCAGCCTGACTGTTCCCTATGGCCCCATCAGAACAGACAGCAAAAtatgaatgtgcatttttttctaacaaaTAAAATGGGGCTAAAAGAAACTATTACCAAAACTGTTGATCTGATATAAAGGTTAAACGCCTAAATTATATAATAGAGACTTATTATGTAATATGTCACTAACAGATAACTTAAACGGTTCACAGAGATGACAcctatattttgtaaattgtgcatttgtttatacagaatttttatatttattatttcatgaagagtatattttcatgcatttctcAAGTATTAAATTTAtagttatgtaaacaaacttgcCTTGTACTGTCCATTGATATTTGCAGCGTTGCTGAGAAATCAACGTACACTGCCCTCTACTGGCACTCAAACCATAACATGTTATTagaaatttgtaaaatgttattttttattattaatactattatttttacggaaaaaaaaaaacgaagagaGGGCGGAGATGGAAAGGTCGATATGACATTAGACTACACGTTTTCAAAGATGATTTAGCACGACTGGAatgaacagttcacccaaaaaatttaaatatcatcattgtttgatataatgtaaataatacctCATGCAGTCCTAAAGCAATATTATGTTCTTTCTTCCTGTCAAGCAGAATATCTTCAGGCAGCTTTTCAGTGCAATTAAAGCGGATAGTAACGTTAAGCTAAAAAAGCTAAAACGTAAACATATCACAAGCGGCCGATAGTTCgcgctgaataaaaaaatggcgCCTTTAGAcgtaattaaaacataatccATTTGTTCCGGCAtgtcatgtgactgatcacGACAGACTAACCGTCAGTCAGCGAGGACTTAAATTCAGAAATCATcgtggcttcagaagacttggaatattgGTTACAATTTATGTGAACATTTATAGCTTTATGGTGCTTATTATCATTTTGGTTATCGCTTGGCGTTATACGTTAGTGATGCTGTAATTGTATTGAAAAGCTACCTATATCCTTTCTGTTTCACGGAAGAAGAAAACGGTGCTTTAGAATGCTGTAAGTAAAAATTTCTAAATTCTTATTGTTGGATAAACTTACCCTTTACACCCATTTCATCTAGTcatttcatgctgttttagccaCTAGGTGGCAGGCAATGCCTTTGTAAATGAACGAAACTAACATGCAACCTCGAGAAATACGTTTTGTCTACGTTCAATAATCCTggtttaatatatgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagattttaAGTTGTTATAATGAACTGATATTctgatataaataatgtatatgtagTGCAGTAACAATAACAATCCTTGTcatgcttttatattaaaagttcATTCTCAGTTACACTTTAAAGAAACTAAACGCACTGACAAATActcaatattaaattatttgaaatgttaggTCTATGTTCCATTAGCTACATTTGGTTAATGGAACAAAATGAAATAGTTtctcatcaaataaaaaattcttaTCTATctagaa

Function

GO: NA

KEGG:

id description
K25185 TRABD2; metalloprotease TIKI

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92632 lncRNA downstream 54099 9731906 ~ 9732154 (-) True G62576
TU92619 lncRNA downstream 75257 9710646 ~ 9710996 (-) True G62568
TU92618 lncRNA downstream 77032 9708973 ~ 9709221 (-) True G62567
TU92617 lncRNA downstream 78059 9707773 ~ 9708194 (-) False fam78bb
TU92616 lncRNA downstream 82655 9703376 ~ 9703598 (-) True G62565
TU92749 lncRNA upstream 158117 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 205738 10043188 ~ 10043398 (-) True G62670
TU92889 lncRNA upstream 217601 10055051 ~ 10057928 (-) True G62749
TU92911 lncRNA upstream 239967 10077417 ~ 10077652 (-) True G62768
XR_006251619.1 lncRNA upstream 290435 10127885 ~ 10150991 (-) False LOC122350767
XM_043247557.1 mRNA downstream 77632 9700394 ~ 9708621 (-) True fam78bb
XM_043247436.1 mRNA downstream 168127 9606505 ~ 9618126 (-) False edem3
XM_043247437.1 mRNA downstream 168127 9606505 ~ 9618126 (-) False edem3
XM_043247434.1 mRNA downstream 168127 9606505 ~ 9618126 (-) True edem3
XM_043247810.1 mRNA downstream 187890 9581828 ~ 9598363 (-) False zgc:92140
XM_043247781.1 mRNA upstream 14782 9852232 ~ 9856606 (-) True lpxn
XM_043246908.1 mRNA upstream 63046 9900496 ~ 9933011 (-) False rfx2
XM_043246907.1 mRNA upstream 63046 9900496 ~ 9933011 (-) True rfx2
XM_043246909.1 mRNA upstream 63046 9900496 ~ 9933010 (-) False rfx2
XM_043246038.1 mRNA upstream 117231 9954681 ~ 9969460 (-) False mllt1a
XR_006251623.1 other downstream 523427 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1128967 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1136288 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 1136288 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1356479 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 117300 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 124347 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 551733 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 603314 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 702769 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile