RNA id: XM_043246165.1


Basic Information

Item Value
RNA id XM_043246165.1
length 2730
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC122349990
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10487790 ~ 10491200 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGAGCTGCTCTCTGGTCAACAGGACTGCAGAAAACAGATCCCAAACTGCAGCTTTGCCTTCACCAGGGTCTTTACTTCAGCCCCCGCtgtctgtttttaattacttattttgaagcagtttcctCTGCCTTGTAAATTACTGGACTTTGCCTTGAAGATGGGGATACAAGATTATAAAGTGATTTATCTTATGACACTGGCTTTGCTTCTGAGTGCTTGTGCTTCAGGAGCAAAAAGAGGAAGTCAAGACACAACACCTACCGATGAGGAGAGTTTCAATCAACATGATTCACAAGAAAGCACACTGCAAGATTTGCTCGAAGTGGAAGATGAAGATAAAGGATCCGTGGACACACAAACTACAAGTCCTTTGCCCTTCACAGAGTCGGCCAATTCCTCACTGGCTGAAATTGGAAACAGCACTGATGTGACTGGTGAACAGGTTCCTAATAGCGATCCGACCAAAAGGAGCATCACAAAAATCCACAATCCTCTGTTTCCCATCACTGACAGCTCTTACAGCGCTTATGGGATTCTCTTTCTGGCTTTTGTGGTGTTTGCCTTCGGCGTCGTGGGTAATCTGGCAGTAATGTGCATCGTGTGGCAAAATTACTTTATGAGGAGCGCGTGGAACTACTTTCTTGCGAGTCTGGCTTTTTGGGATTTTCTGGTGCTGTGCTTCTGTCTGCCCGTGGTGGTCTTTAACGAACTCACCAATAAGAGGCTGCTGGGAGATTTCTCCTGCAGAGTTGTGCCTTACATAGAGGTAACCTCTCTCGGCGTGACAACCTTCAGTCTGTGTGCTTTGGGCATTGACCGCTTCCACGCTGCCACAAGCTCCATGCCAAAGGCCCGGCGAGTTGAGCGCTGTCAGAAGGTCCTGGCCAAGCTGGCGGTGGTGTGGATTGGCTCTATGGTGCTGGCGGCTCCCGAGCTGCTCCTGTGGCAGCTGCATCAGGTGACACCCCCCGGTCAGGGTGACCAAGTGGACACCTGCATCATGAGTCCATATCCAGATCTCCCCGAATCCATCTATTCTCTCGTTATCAACTACCACGACGCACGCATGTGGTGGTACTTCGGCTGTTACTTCTGTCTACCAGTTGTCTTCACCTTGCTCTGTCAACTGGCCACCTGCCATGTATCCGGCGGGAGCGGAAGTTCTCCCAAGCGGCCCGAGGAGCGATCTCcatccaaaaaacaaaagcttcaGCACGCTCAGCAAATCGAACGGCAGCTCAACTGCACTGTCATGGCCCTGGCGGTGGTCTATGGTGTCTGCACGCTGCCGGAGAACGTTTGCAACCTGACTTTGGCGTACGCTCCCATCCAGGTGTCCGAGGAGGTGACTTCTCTTCTGGCCCTCATAAACCAGTTCTTTCTGTTCTTTAAGTCATCCGTGACACCagtgctgctgctttgcttgtGCAAGTCTCTGGGCCAGGCCTTCATGgactgttgctgctgctgctgtgaagAATGCCAACCGAGCAACTCTTCATCCACCCAAAATGTCGCTGAAGGCAAGCTCAAGACCACCAATGATGTGTCCTCCATTTTTTTTGACAAAGCCAAGGACAGTTCAACCATCTTGTCCATTGGCAGCTGAGTAGGCCGATTCCGTCCCCAGTTGATGACATCATGAGATGACATGGAACCTACAACCTACCTTCTTCTCGTTATCCACAAGTGGCCATCATTGCATGAGCAGTTCTTACCGTTATGTTGGAGCATGTTAGCATTGTTCGACTAATCTGAGGCCAAAATTGCAATTTTGGTTTTGGTACAAAcattgtgggaaaaaaagatttttaggaTCTAAAGTTTGCCATAAATCTGAAGATTCATTCCATAATATCTCAGGATGGCTCAGTGTACCTATAACGTCTTAAAAGGATAATTCACCCAATAATTTACCTACCctaatgtcatttcaaaccattGACTTTTTGTCATATGTAGAACACAACACATAACGTTTATGCCCATACCATGAAAGCCAATGGGGTCCCGTGTTGTTTTGCACTCCATTGACTTTCACAGTTCTTCAttatatcttcttttgtgtttgaaatgaagtcatacaggtttggaacaacattagagggagtaaatgatgccagaatttcgatttttgcgtgaactatcCCCTTAATATATCACCAGGGTCTCCGCTCAAGTCAGTATAATTTTGACTTCAGATGTCCCACATTCATAGTTCTACTTTTCTGTACAGACAATTATGAATTTTACACATAGCTCAGAGTGTATAAATATTTAGCGAAACGCTCTGTGAGATCAGAAACGCAGTGAATACTACCAGATCACAAATAACACATCATCTTGTTCATATAACAGGAAAAacttgcaaaacaaaaatgtttttgtctgttaCTCAGGCAAATGTTATTTATcactaattttaattaatgccaCTTTTTTCATAACCACTGAACATTCGTCTACACCGTTGATTGTCAACTTCTGTATATAAGCACTCAGCTGTATTAGAATGTAAATAGGTTATTTTGAAAGCAACCTCCTTGAGCAAACTAGCTTTTCAAGCCCCTTCATGTAGTACGGTAggacaaaaaagacaaattgaATGGTTTACCTCCTCAAGGGACTATTGTAACTTTTGCACATAGCTGCTTTCATAAGcaaattcttttaaaagtcCATAAACAGTTGATAAAACTCTATTCAATAAAtgcctttaaataattaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04244 GPR37L1, ETBRLP2; prosaposin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93013 lncRNA downstream 3191 10383720 ~ 10484599 (-) True G62829
TU92996 lncRNA downstream 3191 10383980 ~ 10484599 (-) False G62829
TU92999 lncRNA downstream 3191 10383980 ~ 10484599 (-) False G62829
TU93000 lncRNA downstream 3191 10383980 ~ 10484599 (-) False G62829
TU93001 lncRNA downstream 3191 10383980 ~ 10484599 (-) False G62829
TU93028 lncRNA upstream 29459 10520659 ~ 10522487 (-) True G62835
TU93067 lncRNA upstream 205135 10696335 ~ 10698125 (-) True G62861
XR_006251661.1 lncRNA upstream 264189 10755389 ~ 10799963 (-) True LOC122350960
TU93074 lncRNA upstream 264454 10755654 ~ 10756006 (-) False LOC122350960
TU93075 lncRNA upstream 265333 10756533 ~ 10756912 (-) False LOC122350960
XM_043247531.1 mRNA downstream 149121 10329776 ~ 10338669 (-) False gls2a
XM_043247530.1 mRNA downstream 149121 10329776 ~ 10338669 (-) True gls2a
XM_043247452.1 mRNA downstream 167417 10316425 ~ 10320373 (-) True cpt2
XM_043247453.1 mRNA downstream 167419 10316425 ~ 10320371 (-) False cpt2
XM_043246944.1 mRNA downstream 187484 10298359 ~ 10300306 (-) True tmco1
XM_043246120.1 mRNA upstream 35147 10526347 ~ 10528717 (-) True LOC122349964
XM_043246124.1 mRNA upstream 38243 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA upstream 38243 10529443 ~ 10533338 (-) True LOC122349966
XM_043246747.1 mRNA upstream 335229 10826429 ~ 10961990 (-) True LOC122350349
XM_043246750.1 mRNA upstream 473382 10964582 ~ 10968087 (-) True c8h1orf174
TU92984 other downstream 9105 10440764 ~ 10478685 (-) False G62826
TU92903 other downstream 95747 10389183 ~ 10392043 (-) True G62760
TU92747 other downstream 518305 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 526089 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1224964 9257952 ~ 9262826 (-) False mindy4
unassigned_transcript_1293 other upstream 49019 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 496246 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 605802 11097002 ~ 11131207 (-) False LOC122349915
TU93259 other upstream 832704 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 1071078 11562278 ~ 11564405 (-) False G63095

Expression Profile