RNA id: XM_043246178.1


Basic Information

Item Value
RNA id XM_043246178.1
length 3225
RNA type mRNA
GC content 0.47
exon number 12
gene id colgalt2b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9562094 ~ 9579853 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTGGAGGGTGTGAAAATCTGTAGGAGGCAACCCACTTTCGTCAAGAGGTAACCTCTCCACCTCTCCCTTACCCCTCCTCACACACCCTCTCTGTCTTCCAGCCTCCCATTCACTCATACGCCCGTTCAGGTTGCGACAGCGGTGTCCATCAGGCAGAGATGCCGGCCGAGGGGTTCGTGGCGGTGGCTGTGTTTTGCGCTCTGATGGCGCAAAACTGCCGCGGGGAGCTTGTGGCTCACGTGCAGGAGCTCAATCCCGTGCCTGAATCCTCCCTGCTCAAGCCCAAAGTCATGATCGCGATTCTGGCTCGGAACTCGGCGCACAGCCTGCCGCGCTACCTGGGCTGCATCGACCGCCTGGACTACCCAAAGGACCGGATTGCAATATGGGCTGCAACGGACCATAATGTGGACAACACCACTTCCATGCTGAGAGAATGGCTGAAAAACAGGCAGAGCAGATACCATTACGTGGAGTGGAGGCCTATGGAGGAGCCACGGTCATACACAGATGAGTGGGGGCCGAAACATTGGGCTCCATCTCGTTTTAATCATGTAATGAAGCTCAGGCAGGCAGCGCTGAAGGCTGCACGAGAACGCTGGGCTGATTATATACTGttTGTCGACAGTGATAACCTCCTGACTAACCCACGGGTGTTGGATCTAATGATGGCAGAGAATTTCACACTGGTGGCACCTATGTTGGATTCCCGATCCCTTTACTCAAATTTCTGGTGTGGCATCACGCCTCAGGGTTATTACAAGCGTACCCCAGACTACCAGCCTATCCGTGAGTGGAAGCGTTTGGGCTGTTTCTCAGTTCCCATGGTGCACTCCACCTTCCTGTTGGATCTGAGACGCAGCGCCACACTCAACATGGCTTTCTACCCACCTCACCCCGACTACAGCTGGGCTTTTGACGACATCATGGTTTTTGCATTCTCCGCGCGACAAGCTGGAGTACAGATGTATGTGTGTAACAGAGAACATTATGGTTTTCTGCCTGTACCGCTGAAGGCCCAGCAGAGTGTGGACGATGAGGAGGAGAGTTTCACACACACTATAACTGAGGCCATGATTGATCATAACATAAAACCCTCTGAGTTTCTCTTCACTCCACCCAAACTCCAGGACAAGATGGGCTTTGACGAGATCTTTCTGATTAATCTGAAGAGGAGGTTGGACCGGAGGGAGCGGATGTTGAACACAATGGCGGTGCTGGAAATTGAGGCTACACTGGTTGATGCTGTAGATGGCAAGGCTCTGAATACGTCTCACCTTCAAGCTCTAGGTATAGAAATGATGCCGGGATATAAAGATCCATACTCTGGTAGGGTGCTGACGCGTGGAGAGATCGGCTGTTTCCTCAGCCACCACTTCACATGGAAGCAGGTGGTGGAGAGGGGTCTGCAGCATGTGCTGGTGTTGGAGGATGACGTGAGGTTTGAGCCTCGATTTAAAAGGAGGTTACAGACCATCATGGAGGATGTTAAAAAAGCTCAGCTAAACTGGGACCTCATATATGTGGGCCGTAAGCGGATGCAAGTAGCTCAGCCAGAGGTGTCCGTAGAGGGTGTTAATAATCTGGTGGAGGCTGATTACTCATATTGGACTCTAGGTTATGCCCTTTCGCAGCAGGGGGCCAAGAAACTCCTTGCCGCTCAGTCGTTCGGCAAAATGCTCCCTGTGGATGAGTTCCTTCCAGTCATGTTCAACAAACACCCAAAtgcaGCATACATGTCTCACTTTGATCCCAGAGATCTGCGTGCTTTCTCTGTTGAGCCGCTGCTTTTGTACCCAACACACTATACGGGTGAGCCGGGTTACTTCAGCGACACAGAGACCTCCACTATTTGGGATGACGAGGCCACCAACACAGACTGGGACAGACAGTATGCTAAAAAAACTGCTCAGCAAGAACAAATTCGCTCAGTTGCTCAGAACAGCGTCACCGGGGACACACCGCCGCCTGCATCCCGAGCCTCGCGAGACGAACTCTGAGTCCTCAACGTGTTCTCAAACTGCACAAATGAATGACAAAACACACTGACTCATAGACAACTCACTTAATGTCCAGCAGTCCCCTCCTCCCTGGCGACACTTCAGCCAATAGCATGACAGCTGGCTGGGATGCTCAAACACCATTGGCTGGCTGGTTGATTTTGCAGACACACAAGCTCCTTTTATTTCcacttatttatttcatcatgcCTTCCAGGGACCAAACTGTCCTTGGTGGACACTTCAAAGTGTTTGAAGGATGAAGACACTCCGGAAGGACCGGACGGAGGAACATAGACATATGGGAGTTAGATAAATTTGCTAGTGGATGAACAagacagatgaacctttattttaatgttttcttttgtaatataaaaacagatacGATTTATGCGCAGattactgaataaaagaatCCTACAGCCTGtctacatttttactgtatactgtcaggaaagaaattatattgtaagttgatatttttatatagctttacaaattcacttttaaatgaaattcatGTGTCAAATGTATATTAGAGCCATAAATGAAATGCAGTAGTTACATACTTTACTTTACATACTTGGGGGAAGGTTGTTCAAatctgtcttgttttcagataaTTCTGTTGTATTGGATTTACTCTAAAGCAAGTTGCATTTTCTTAAAAGGAGAACACGTGATTTTTGACACATCATTCACTGGCTATTATGTGAACGTTTTAATGAATAAGAGCAGCTGTACCCAGTCTAGTTCaacgtgtgtgtgagagacaaaaggtgtttttgtgttattgtgaaCATCATATCGTCACTAATTCCTTCCAGAATATTCCATAAGGCTCCTGTGTCTTAAAAAGTGTATGATTCTGCTGGGCATTATGTCAGCTATCACAATTTGAAATGGCTGGATGCAAACGCcctctttttttccaaacacaCTCGTATTTTTCCACTCAGCAGGCTGGCTCCTGTTCTCTGACTGTTGATTTCATTACCTTCTTTGATATCTGAAGATGTCATGGTGCTGGTGGTGGGCTGATTCAATAAAACTGACTGatcaataatataatgcatCTAATGATGTCTGTGCAAGCTAACAAAATTCATAGCTTCATATTCATTTTGGTAATATTGGCAACATTTCTGTGCTTGTCTTCTTCAGTAACGTCTGTTTCTATGCTAAATCTTCAATAGATGTGTTTGAAACGTCCTTTTAGT

Function

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92557 lncRNA downstream 35128 9526627 ~ 9526966 (-) True G62525
TU92550 lncRNA downstream 147655 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA downstream 147655 9408414 ~ 9414439 (-) False G62519
TU92265 lncRNA downstream 476900 9082795 ~ 9085194 (-) True G62293
TU92206 lncRNA downstream 523630 9030865 ~ 9038464 (-) False G62250
TU92615 lncRNA upstream 124942 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 125359 9703376 ~ 9703598 (-) True G62565
TU92617 lncRNA upstream 129756 9707773 ~ 9708194 (-) False fam78bb
TU92618 lncRNA upstream 130956 9708973 ~ 9709221 (-) True G62567
TU92619 lncRNA upstream 132629 9710646 ~ 9710996 (-) True G62568
XM_043246992.1 mRNA downstream 9790 9528966 ~ 9552304 (-) True rgl1
XM_043246993.1 mRNA downstream 19560 9528966 ~ 9542534 (-) False rgl1
XM_043247902.1 mRNA downstream 36033 9521721 ~ 9526061 (-) False plin3
XM_043247901.1 mRNA downstream 36033 9521721 ~ 9526061 (-) True plin3
XM_043247431.1 mRNA downstream 41341 9513951 ~ 9520753 (-) True zgc:77486
XM_043247809.1 mRNA upstream 3811 9581828 ~ 9605966 (-) True zgc:92140
XM_043247810.1 mRNA upstream 3811 9581828 ~ 9598363 (-) False zgc:92140
XM_043247436.1 mRNA upstream 28488 9606505 ~ 9618126 (-) False edem3
XM_043247437.1 mRNA upstream 28488 9606505 ~ 9618126 (-) False edem3
XM_043247434.1 mRNA upstream 28488 9606505 ~ 9618126 (-) True edem3
XR_006251623.1 other downstream 299268 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 904808 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 912129 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 912129 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1132320 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 376733 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 383780 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 811166 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 862747 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 962202 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile