RNA id: XM_043246366.1


Basic Information

Item Value
RNA id XM_043246366.1
length 1885
RNA type mRNA
GC content 0.44
exon number 7
gene id acer1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9970128 ~ 9976762 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGGTCGCCCGGTGAGGTGCAGGTAAACTTAACCTCAGCTCGTTGATCTTGTGCTGCAGCTCGCGCTGGAGGCGGGCGCGTGCCGGTCGTTCTCTGGTAAAACGGTACGTTTCAGGTCTGTCCGCATAACGAGCTGACAGCTTCACTATACATTGGCACAATGAGGAATGCTACCGTTCGCTGGGTTTCACCTGAACTCTCCAGGTGATGTCACAACGCGAGACCCGAGTAACAGGATCGGGGACATTTCTCCCCTACTTAAACCTGACACATGGAGCGCGCCGCTACGGATGCGCTTTGGAGAGGGATCCCGTCATTCCCATCCTTTGACAAAATGGCAGGTGTGTTTGCCTACGAGAGCTCTGAAGTGGACTGGTGTGAGGACAACTATAAACATTCAGAGAATGTTGTGGAATATTTCAACACGATGAGCAGTTTTATATTCTTTGTGATCTCACCCATAATGCTTTACTTGCTACACCCATATGCCAAGGAAAGGAACCTGGCTGTGCACCTGGTCTGGATCATGATGGTCTTTGTAGGTATCTTCTCCATGTATTTTCACATGACTCTGAGCTTTATGGGCCAGATGCTGGATGAGCTGTCAATCCTGTGGGTCTTGGCCCTTGGTTACTCCCTGTGGTTTCCGCGGAGACACTTCCCTTCTTTTATTAAGGACAGgaAATCCTTCTGTCATATGGTCCTGATCATCACTGTCATAAGCACTCTGTCCTCTTTTGTCAAACCTACAGCCAATGCCTACGCCCTCAACTGCTTCGCCATCCATATCCTCTACTCTCTGTTTGTGGAATTAAGGAGTTGCACAGATGAGAGAGTGCTGCGTCTGGCCTGGGCGTCCATTGGCCTGTGGGTTCTGGCTATCTCCTGCTGGATTAGCGATCGCTTTGGCTGCAGCTTCTGGCAGAAACTGGACTTCTGTTATCTGCATGGTATCTGGCACATTCTGATTGTGGTGGCCACAGCTTATGCTAGTACTTTGGTCGCTTACCTGGACGCTAGTTTGGAGATCCCTTATTCCCTACCTGACCTGCAGTACTGGCCACGGAATAACTGGTCCATTGGACTTCCTTACATAGTCCTCAAGGGCACCACAAAGACACAGAAAAGATGTTAACAGGCATGTTTAAAGCTTGGAGTAACGCTGATTCAGGACCAGcctttacatttccaaaatggTGAATACATTTATATGGGCAGGAAGGAGCTGATCCTAGATCAGACACTGTACGTTATGTGAACTCTGAAGAGAAACTTATATGAAACAAATGCTGTGCTGAGTTGTTGCAGTTTCTGGAGCTTTCTTCATATTTCTCACAGAAACTGAAGTATGAGTGTGAATGTTTCTATGCAAGTGACCGTTCATATTCTCATCTTTACAAACAACATGGTGTTGTTATGTGAAAACAGATATTTGCACTGTTGTGACTAGATTGAATGTTTGTACAAAGCATTCTGAATTTTACTTGATTTTCTTGTTAACTGAGAAAATTGTTATAAGCAACCGTTTGATTCATGGGTGAAACTTGAATACtaattgtaaaagaaaatatcaatGCTCGATTCATAGTCTGTTCAGAGGAAGTCATGCCGCCTGTCTGATGTGAGATGTCACTTTCTGAAATGATTTTCCCACAGCAAATGGTGCAGACGTTTGGGGATTATGTATCATTTTGATGtggcatttttgttattttactgtgtttcgttaaaaaactattttaacttCTAACTTCCACCTCAGTGTATGAAATTGTGAATATTGATGATGGCGTACTGTTCAATGACAACACTGTGGAAAAGACTTATGTGacataaaactaattatttgtggcttatttttatataaattatgattGCTGGGA

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K01441 ACER1_2, ASAH3; alkaline ceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92632 lncRNA downstream 237974 9731906 ~ 9732154 (-) True G62576
TU92619 lncRNA downstream 259132 9710646 ~ 9710996 (-) True G62568
TU92618 lncRNA downstream 260907 9708973 ~ 9709221 (-) True G62567
TU92617 lncRNA downstream 261934 9707773 ~ 9708194 (-) False fam78bb
TU92616 lncRNA downstream 266530 9703376 ~ 9703598 (-) True G62565
TU92749 lncRNA upstream 18805 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 66426 10043188 ~ 10043398 (-) True G62670
TU92889 lncRNA upstream 78289 10055051 ~ 10057928 (-) True G62749
TU92911 lncRNA upstream 100655 10077417 ~ 10077652 (-) True G62768
XR_006251619.1 lncRNA upstream 151123 10127885 ~ 10150991 (-) False LOC122350767
XM_043246038.1 mRNA downstream 668 9954681 ~ 9969460 (-) False mllt1a
XM_043246037.1 mRNA downstream 668 9954681 ~ 9969460 (-) True mllt1a
XM_043246908.1 mRNA downstream 37117 9900496 ~ 9933011 (-) False rfx2
XM_043246907.1 mRNA downstream 37117 9900496 ~ 9933011 (-) True rfx2
XM_043246909.1 mRNA downstream 37118 9900496 ~ 9933010 (-) False rfx2
XM_043247334.1 mRNA upstream 2874 9979636 ~ 9995108 (-) True myo1f
XM_043247333.1 mRNA upstream 2874 9979636 ~ 9994898 (-) False myo1f
XM_043247335.1 mRNA upstream 2874 9979636 ~ 9988654 (-) False myo1f
XM_043247916.1 mRNA upstream 18785 9995547 ~ 10041769 (-) True adamts10
XM_043247917.1 mRNA upstream 18785 9995547 ~ 10029590 (-) False adamts10
TU92747 other downstream 643 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 8427 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 707302 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1312842 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1320163 8647281 ~ 8649965 (-) False mrps36
TU92903 other upstream 412421 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 464002 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 563457 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 1010684 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 1120240 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile