RNA id: XM_043246480.1


Basic Information

Item Value
RNA id XM_043246480.1
length 2225
RNA type mRNA
GC content 0.46
exon number 8
gene id ptk6a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11569548 ~ 11575213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATgccaatttatttaaatacatttaaatctacAAATATCTGTTTAATCTTGCTCACGTTTTAATCTGGATCAGAACTTCGAGGAGTTCGTTGAGTTTCGTACCCGTTTAAATTGTGGTCACGTCTCAAATCTGATTGTGCTACATGACATACCTAAACAGCATTCTTGGGTATAGGTGCTGTCAGAAATGCTGTCCAGGTCGACGGCGGTTGAGACGCAACCTGCGTGTGCTCCTCCCAGCTCTTTCACTCGAGTTTAGTCGTTTGCCGGTGGAGGACTCCCATTAGTCCGGAACCTGCGAGAGCCATcgattcaaattcaaatgaaatgtccAAGGACGGGCGCCGCTCGTGTTCCGCTTTGAGGGCGCTTTGCGAGAGGCTCTTCAGGTCGTCTAAGACCGAAGTTCCAAAACCGGCGAATACCAGCAAACTTCAGACACAAAATGCCCCGAACCCGCCCTCTTCTGAGGCCTCCGGTGAAATCTACACGGCGCTGTGGTCCTTCAGGGCTCGCGCGGACGAGGAGCTGTCCTTTCAGGAGGGAGAGCAGTTCCGAATCTGCGAGCGTCAGGGTGACTGGTGGACGGCCGTTAAACTGGACACAAACGGAAGGGTGACCGACAAGGGCGTCGTTCCTCAAAACTACCTTGCGAGAAGGAAGACGGTGAAAGAGCAACCTTGGTATTTTGGGACGCTGAACCGCTTTGAGACCCAGAATTTGCTCTTGGCGCCGGGGAATGGAGTTGGCGCTTTCTTGTTGAGACACAGTGAAAGAGATCACATAGGGTGTGTATTATCAGTGTTAATCAATAACAAGGAAGTGAAACACATTAAAGTCCACCAGAATCAGAATGTAAGTTTCTATTTGGATCAGAGTCAGATATTTCAGAGCCTGGAGAACCTGGTGGAGCACTACAAGAGGAACATCCTGAGCTGTGGTATCTGTCTTACACGGCCATGTGCACGGCCAGAACCAAAACCACAGGATCTTTCCCACCAAACAGTAGATGACTGGGAGTTACCAAAAGAGGAATTCACTCTGGAAGAGGAGCTCGAGTCTCTCAATCACAGGGAGTTCCTGATGGAGACTCAAATACTGAAAAAGCTGAGACACAGACATCTTATCACACTCTTTGCCATCTGCACAAGCTCCACCCCCTTCTACATCATCACTGAGCTTATGGAAAAAGGCAACCTGCTCAGTTTCCTCCGAGGCGAGGAGGGGCAGAACCTGGAGCCGCAGGAACTGATAGAAATGGCGAGTCAGGTGGCTGATGGGATGGCGTACCTTGAGGAGCAGAACAGCATCCACAGAGACCTGGCAGCCCGGAATGTTCTAGTGGGACCCAATTACATCTGTAAAGTGGCCGACTTTGGCCTAGCTCGCATCGTCAAGGACCCATTTTACTCATCTGATGATAAAACAATACCATATAAGTGGTGTGCTCCTGAAGCCATCAGCCATGGAAGGTTCTCCAACAAATCTGATGTTTGGTCGTTTGGGGTCCTGCTATATGAAATGTTCAGTTATGGCGGAGTCCCGTATCCAGCTTTCTCAAATCAAGAAGTGTACAGTATGATCACATCGGGCTACCGAATGCCTTCGCCCTCTAAGTGCCCGTCGCACATCTATGAGATAATGCTGATGTGTTGGAAAGACTCAGCTCACGAAAGGCCAGATTTTAATGAACTGAGGGCTCTCCTGGAGAGCTCCTGTAGTCGATACATGGATTGGACATCTGAGAGCTGCAGTAACACATCAGATCCAGCAGAAGGCATCAGTTAACAGTGCCATGCAAAGACAGACAAGTGGGAATGTCCCAACAACAGCTGTTTATGCATCTAAACGCCTTTCCActcatttttttacagtatttatgcacttttacttttttgtgtgcTTAGTTTCTAATTTCATGTgtgaattatttacattaaatgtagtAAAGCCCTTCTCAAATTGTACTTGGATAATACTGAAGATTATTTTATCCACCTTTATCCCATCCTGATTTGGAGACGTATACGTTTCCGAATGGATCATATggacttaaataaataaaaccagttTTATGTTCTGCTAAATAACTTCCCTTCACCAGATCTGCACCCTGAAATTTAAAGTAAcggtatataataaatacatttttgcatcagaaatgcaaatatatgataataaaaactaatttcaataaatccttttttttcacTAGGGACTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93422 lncRNA downstream 4210 11562278 ~ 11565338 (-) False G63095
TU93423 lncRNA downstream 5143 11562278 ~ 11564405 (-) False G63095
TU93427 lncRNA downstream 5143 11562278 ~ 11564405 (-) False G63095
TU93389 lncRNA downstream 7915 11560987 ~ 11561633 (-) True G63076
TU93388 lncRNA downstream 7989 11560987 ~ 11561559 (-) False G63076
XR_006251589.1 lncRNA upstream 45234 11620447 ~ 11621205 (-) True LOC122350252
TU93463 lncRNA upstream 73296 11648509 ~ 11651904 (-) True G63120
TU93470 lncRNA upstream 88222 11663435 ~ 11664774 (-) True G63127
TU93477 lncRNA upstream 91953 11667166 ~ 11667480 (-) True G63134
TU93660 lncRNA upstream 246071 11821284 ~ 11823244 (-) True G63254
XM_043246486.1 mRNA downstream 65516 11481644 ~ 11504032 (-) True si:dkey-70p6.1
XM_043247378.1 mRNA downstream 118102 11445273 ~ 11451446 (-) True emilin3a
XM_043246406.1 mRNA downstream 176877 11357175 ~ 11392671 (-) False magixa
XM_043246402.1 mRNA downstream 176879 11351304 ~ 11392669 (-) True magixa
XM_043246446.1 mRNA upstream 3949 11579162 ~ 11615271 (-) True nol4la
XM_043246525.1 mRNA upstream 100061 11675274 ~ 11683625 (-) True gpr173
XM_043246489.1 mRNA upstream 167926 11743139 ~ 11747881 (-) True wasb
XM_043246488.1 mRNA upstream 167926 11743139 ~ 11747879 (-) False wasb
XM_043246487.1 mRNA upstream 167926 11743139 ~ 11747878 (-) False wasb
TU93421 other downstream 5143 11562278 ~ 11564405 (-) False G63095
TU93424 other downstream 5143 11562278 ~ 11564405 (-) False G63095
TU93426 other downstream 5143 11562278 ~ 11564405 (-) False G63095
TU93259 other downstream 223690 11323904 ~ 11345858 (-) False LOC122350269
TU93213 other downstream 438341 11097002 ~ 11131207 (-) False LOC122349915
TU93692 other upstream 203058 11778271 ~ 11779251 (-) True G63274
unassigned_transcript_1295 other upstream 221917 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93842 other upstream 688481 12263694 ~ 12264533 (-) True G63385
XR_006251575.1 other upstream 776033 12351246 ~ 12363095 (-) False kcnq2a
TU94636 other upstream 2234215 13809428 ~ 13863250 (-) True G63933

Expression Profile