RNA id: XM_043246729.1


Basic Information

Item Value
RNA id XM_043246729.1
length 5473
RNA type mRNA
GC content 0.46
exon number 25
gene id eps15
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8392345 ~ 8416553 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGAGGAATCCAGTACCAGGTTTTATAGCATCCCTATATTGCCCATTGCCTATCGCAACGCAGGATGAACTAGTGGGAACAGAAACACTATGGCTGCCAGTCTCTCCCTGACTCAGCTTTCGAGTGGGAATCCTGTCTATGAGAAATACTATCGACAGGTAGATCCGTCCGGCAGTGGGGGTGTAGGAGCAGCTGATGCAGCCTTATTTTTAAAGACGTCTGGCCTTACAGACCTGATCCTTGGCAAGATATGGGACTTGGCAGATTCAGAACGCAAAGGATCGCTAAACAAGCAGCAATTTTTTGTCGCCCTCCGCTTGGTGGCGTGTGCTCAGAATGGACTTGAGGTGTCTCTTAAGAGCTTAAATACAGCTGTCCTTCCCCCAAAGTTTCATGACACTAGCAGTCCTCTTCAGTTTGGCCCCGTGCCCACGGACAGCCCATGGGTCGTCAAGGCAGAGGAGAAGCTAAAATTCGATGCCATCTTCGACAGCCTCTCTCCTGTGGGCGGCATGCTCACGGGGGATAAGGTCAAACCAGTGCTCCTCAATTCTAAACTCCCCGTGGACGTTCTTGGCAGGGTTTGGGAGCTCAGTGACATTGACAGAGATGGCATGCTGGACAAAGATGAGTTTGCTGTGgcCATGCATTTGGTATACAGAGCCCTGGAATCCGAGCCAGTTCCTATGTCTCTGCCTGCTTCTCTGATTCCACCATCAAAACGGAAAAAAATAGCCACGCCTCCCGTGATGCCCCTCCTACCATCACCAGCGCAGCAAAAAGAGAGAGGCTCCTCCCACTCTGGATCTAAAACACTGCCAGCAAAACCTACACCACCACAGTGGGTGGTGTCTCCAGCAGATAAAGCCAAATATGATGACTTATTCGCCAAGACAGACAACGACATGGATGGCTTGGTGTCCGGTGCTGAGGTCcgagatatatttttaaagactgGTTTGCCATCTGCCACTTTGGCCCGCATTTGGGAGCTTTGTGATATAGGAGACATTGGGAAGCTGAGCCGAGATCAGTTTGCATTAGCTCTATATCTAATCAACCAGAAGCTGTCAAAGGGAGTAGACCCACCCCAGACACTCTCTCCAGAAATGATCCCTCCTTCTGATAGACTGGCACGACAGAACAATGCTGCCACAGTACAAGCTGCCGATTTCTCTGCGATTAAAGAGCTGGACTCGCTCACTAATGAAATCATGGACCTACAGAAGGAGAAGAGCGTGGTGGAACAGGACAtaaaagagagggaggaaacTATACGACAGAGGAACAGTGAAGTCCAGgaccTGCAGGAGGAGGTTCAGAAGGGCTCGGAGGAGCTGAGCCGCCTGCAGGCGGAGCGACAGGAGGTGCAGGAGAAGCTGGAGAGGCTGGACGAGCAGAAACGCTCTCTAGAGGAGCAGCTCAGACTCATACAGCAACAATGCAGCCAGGAAAACCAACTGATCCAGTCACTGCAGGTGGAGCACTCAGAGCAGGAGCAGAGAATCGGTGACTACGAGGAGGAGTTGACCAGAGCCAGAGAAGAACTGCTCCAACTGCAGGAGGAAACGCGTCAGCTGGAAGAGAAGGTTCAGTCCGCCCGTGTTCAACTCTGCCCCCTTGAGGATGCTGTTAAAGAATCCCACACACAGATTGCTCAGAAGCGATTGGCTGAGCTTAaaacagaggagagagaagtGACTGCACGGCTTACTTGGAAGGTCCTGGAGGAGCCAGTGATTGTCAACGGAACAGCGCCCTCGTCTGAGCAGCCCGAGCAACTGCAGTGGCCTCAACCCACTGCACAACTGCTCGAGCAACCCAAAGAGGACAAAGTTCAGGATGAAGAGGAGCACTCGTCTGTTGATGAGCCGCAAGAGCTCAGAGTCACAGAGGAGCAGCCCGGGTCAGAAGCAGAGGAGTCATCCACCAGCCCAGAGGAGCAAGAGCCTAAAGCTGACTTTTATAGCTCTGACCTTTACAACAGTGGGTTATCCACTGCCAGTCCCACTACTGTCGCCTGGCCTCAGGGGAACACGGAAAGCACAACACAAGCTAACCCAGAGGTagaggaagagaaggaaaaagcaGAGGACCTGCCCACCACCAGCACTCCAAAGGCGGAAACTGTGGAGCCAGAGAAGAAGGAAACTGCCCAGCCAGTTACTAACCCACCCAGCGGTCCTGGCCTTGACTTCTTCCATTCTGACCCTTTCACTGACAgcGATCCATTCACTGAAGATCCCTTCTCAAAAGTTGACATTTCAGATCCTTTTGGTGGGGACCCTTTTAAAGGCACAGACCCGTTTGCAGCAGACAACTTCTTCAAGCAGTCTTCGGGTGGTTTCTCCTCAGGAGATCCTTTTGGTTCCTCCGACCCATTCAATGCCACCACAGGCCAAAAAGAGCCTGATCCATTCACATCCAGGACCAGTAATGCTGTCACTCCAGGTCCATTTGCTTCCAGTAGTGGTAGCATCCAAGACACTGATCCGTTCGGATCCAAAATGGATGCCCTGGGAGACTCAGATCCCTTTAGCTCGACTGGCTCAGGACATGACCCATTTGGAGGATCAGATATTCCTATTAGAGAtggaccagcagcagccaacgATCCTTTTGCCCCAGGAGGAACTACAGTAGCCGCTAACTCAGACCCAGATCCCTTTGCTGCAGTATTTGGCAATGAGACTTTTGGAGGAGGTTTTGCAGACTTCAGCAGCTTAGCAAAATCTAATGGCAGCGATCCATTTGACTCGAGTACAAACAAGAACTTATTTAAGGAGGACACTCAGTCAGATGTTCCTCCAGCATTACCGCCCAAAACCGGAACACCCACCAGACCTCCACCTCCACCCCCAGGTAAACGGTCCAACATCCACCGATCAGAGTCCTCAGAGTCATTTCAAAGACGTGGTCTATTCAAGGCTCAGGGTTCTGGAGAGTTCTCCTCCCTTCCCGCTAAAGACTCGGTACCAGACCCCTTCGCCCCTTCCTCACCCCACCAAGCCCCACGCGACCCCAACCGATTCGCCAGCTTTGACAAAtACCCCACAGAGGAGGACATGATAGAGTGGGCGAAGcgggagagtgagagagaagagagggagCGAGTGGCTCGTCTGACCCAGCAAGAGCAGGAGGACCTGGAGCTGGCGATAGCCCTAAGTAAATCCGAGCTGTCTTGACCCAAGCTTGGTAcagcaccaccaccaccacccgAGCCACATTAacaaggaggaggaggagcagagGAAAAGCTGGAACCACCACAATTAGAAGAATCCTTCCACCTCCATGTCCACTTGATAATCATCTAGGATTCCAGCTTCTTCTGAATGTCCGCTGAGTTCTCCCCGGTGTCCGGTTGGCTGGAGGCCGAGTTAAGATGGAGTTAAAGGTAACAGACTAGTTGCAGCCTGTGGCTTGAAACCTCTAGTGCGACTCCCTTCGTTTTTAAATGATCTCAAATCAAGAGAGCTCCACTGATCTAAAATTTTAAGATGTCCAGTTCAATATCACCGAACAAGTGTTTCTGAACAAATCTATTCCCATCTATTTGAAGTTTATTTCAGAGTGATTATTATAAGGTTATCGGTCGGGTGAATGAATGTAGATCTGTGATATGGAGGCTTAAACAAATCCACAAGAAGTTCTCCAAGGTTCGTTCTCTTCCTTTCGTGGGCAATATTAGCACATTTGTTCAAAGTTTACAAGCGGCCGAACTAGGCAGCTTCATTCGCTTAAAGTTTCAGCAATAGTTCTCGAACACAAGAGGCTTTTATTGTGGGCATATCTGTCCACTCTCAGGAACGTATCCCACAAGCCATGAAACCGCAACCTGTTCAGTGAATTTCAGCTAGAATCGAAGCTGATGTGCTGGTAACATTATTAGCTTACATAAACCACTACTACAACTGAATTTCTACCCTACTAAAAGAGAACATTGATGAAAGAACAACCGTGCAACTCCGTTTTAACTTTATAATCTCAACAATACAGCATTTATACTTTGACTCATTCTGTCCTTTTGAAGAATCAAAATCTTGACAAACTACTAAGAGTCATTATTTGACATAAGAAATTTATAAATAGCTggtataaataatgaaaatgtacatatttgtgAATTGTTTTGCCAGTAATCTTGTACTACAGTGTATTCATATCCTAAAACATACTctattttatcaaaaaatgtGTAGAATATAGAAAgtttgcttaataaaaatgtccCTTCTGTCTTATTCCTAATGACAAGTGCCGAAAAGATAGAATAAGATGAATTAAACAAATTGTGGCATTGTGgcacaaaaactgatttttatgagtacacacacacacacacacacacacacacacacacacacacacacacttgtgtgtgtgtgtgtactcatgCTCGTAAAATCAGTTTTCTGATAACAAGTGCCTACCTGTTTAGTTATGCCTTGGAGAGAGAAAATCAGCTTCAATCAAACATGATAATTTGTTAATCCTTTAATAGCATTACTTTTCTCAGAAGCACTGTTGATACTCAAATTTCAGTGTCAATTATATAAGAACCATTTGCTTCTCTTTTATATCTCGCACAACATCGTCACTGCCACATttcaaaagattattaaaacactCTCTGGTGATCAATAGTGCACAGTTGGTTGCAATTTCACGTGCACAGTTTGGTATAAGCTTAACGGAAGGTAAATTTAAACCTAATATCAATGCagttatcatttattatatctGCAGCatgtcaaaaacatttcaattgtCTGTGTGTAGTTTCACCAGTAGGTGGACTCGCTGAGATACAACACGCTTTGTGTGAAAAACATGAACTCGCTGTCAAGGTTCAGTCCCATGGGCAGAGTTGGATTCTGGATTGACTACAATAGACGTGCTTTGTGAAGATTTTCATTCACACAGAATGTATATTATGAAAGCATCTGACTGCAAAATGGAGTAGTGTACTCCTTTTTGAATGCTTTGTCAGACTCACACAGAAATATGTGGCGaatgtgaaaatattcaaaGAAGGGAACAGCAAAATATGTCTAATCTGGCTTTTATTTGGCTAATCATAACATTATGAAGATTTGGAACATTACAATTAACCAGGCAGAaacacagcattaaaaaaaacacctactttcctcatttaaaaaaaaaaaaatgcttggcCTTCTGTTAATGGCTGCTGCTTGTTTATTATCGGCCCTGCATATTGTTAAAACGTTCTTATGCTCTGTCTATTGTTGATcatgtacgtatgtatgtatgtatgtatgtataagcTTTGTGTGCCTCTAAAAGAAAACCACTTATATGTTGGCCACTGACTGCCTTTTAAGAACAGgctaattgtattttatttttttaacgtcCCATTATTGGAGgcaattgtttaaatatgttaagtaacatgtaattaaaacaaacaaaataaatattaaactattaaaaatgta

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251686.1 lncRNA downstream 123128 8253538 ~ 8269217 (-) True LOC122351107
XR_006251685.1 lncRNA downstream 123128 8255469 ~ 8269217 (-) False LOC122351107
XR_006251572.1 lncRNA downstream 159571 8217019 ~ 8232774 (-) False LOC122350139
TU91781 lncRNA downstream 174928 8210043 ~ 8217417 (-) True LOC122350139
XR_006251635.1 lncRNA downstream 437703 7951561 ~ 7954642 (-) True LOC122350891
TU91913 lncRNA upstream 10732 8427285 ~ 8430135 (-) True G62076
TU91990 lncRNA upstream 91338 8507891 ~ 8508123 (-) True G62120
XR_006251637.1 lncRNA upstream 295484 8712037 ~ 8739931 (-) True LOC122350893
TU92069 lncRNA upstream 295670 8712223 ~ 8739953 (-) False LOC122350893
TU92070 lncRNA upstream 295670 8712223 ~ 8713432 (-) False LOC122350893
XM_043247944.1 mRNA downstream 851 8372657 ~ 8391494 (-) True ttc39a
XM_043247945.1 mRNA downstream 4646 8372657 ~ 8387699 (-) False ttc39a
XM_043247198.1 mRNA downstream 20608 8356847 ~ 8371737 (-) True rnf11b
XM_043247529.1 mRNA downstream 46324 8285231 ~ 8346021 (-) False faf1
XM_043247528.1 mRNA downstream 46324 8285231 ~ 8346021 (-) True faf1
XM_043247751.1 mRNA upstream 877 8417430 ~ 8422195 (-) True calr
XM_043247881.1 mRNA upstream 6186 8422739 ~ 8426706 (-) True tor3a
XM_043247873.1 mRNA upstream 14640 8431193 ~ 8457234 (-) False osbpl9
XM_043247872.1 mRNA upstream 14640 8431193 ~ 8457234 (-) False osbpl9
XM_043247871.1 mRNA upstream 14640 8431193 ~ 8457234 (-) True osbpl9
TU91784 other downstream 174928 8117008 ~ 8217417 (-) False LOC122350139
XR_006251629.1 other downstream 704783 7678416 ~ 7687562 (-) False spata6
TU91479 other downstream 1291413 7094898 ~ 7100932 (-) False lhx4
TU91442 other downstream 1575621 6814488 ~ 6816724 (-) False LOC122350104
TU91179 other downstream 1949363 6431032 ~ 6442982 (-) False LOC122350671
XR_006251692.1 other upstream 11062 8427615 ~ 8427687 (-) True LOC122351129
XR_006251691.1 other upstream 12272 8428825 ~ 8428904 (-) True LOC122351128
XR_006251695.1 other upstream 12700 8429253 ~ 8429320 (-) True LOC122351132
XR_006251694.1 other upstream 12921 8429474 ~ 8429544 (-) True LOC122351131
XR_006251693.1 other upstream 13141 8429694 ~ 8429774 (-) True LOC122351130

Expression Profile