RNA id: XM_043246737.1


Basic Information

Item Value
RNA id XM_043246737.1
length 5076
RNA type mRNA
GC content 0.42
exon number 16
gene id prkcz
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8820356 ~ 8911987 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACCTCTTGGACCCGATGCATCCTAAGAAGGCTGACGAATCGATCTACCGCCGTGGAGCTAGACGATGGAGGAAGCTGTACCGGGTGAACGGACACCTCTTCCAGGCCAAGCGCTTTAACAGGaaAGCGTACTGTGGCCACTGCAGCGAGAGGATATGGGGACTGGGGCGTCAGGGCTACAAGTGTATCAACTGCAAGCTACTGGTCCATAAACGCTGTCACAAGCTCGTCCCACTGACCTGTCAAAGGCATATGgATCCAGTCATGCCATCACAGGAGCCGTTGGTAGACGATGATAAAAGTGGAGAGGAAGTGGAGCTCCCCCCTGAGGACCCTGAGGAAACAGACGCAATCCCTTTTTTTTCAGGACACAACCGGAAAGTGGACAAAGCTGAAGATGACACGGAGGATCTGAAGGCAGTGGTGGACGGTATCGAGGGGATTCAGATCTCTCAGGGGCTCGGTCTGGGGGACTTTGACCTGATCCGGGTGATTGGGAGGGGCAGTTATGCTAAGGTGCTGCTGGTCCGACTCAAGAAGAACGAACAGATTTACGCCATGAAGGTGGTGAAGAAAGAGCTGGTCCATGATGATGAGaagaagagaaagGACATTGACTGGGTCCAGACAGAGAAACACGTTTTTGAACAAGCATCAACCAATCCATTCTTGGTGGGACTTCACTCTTGCTTTCAGACAGAGAGCCGGCTGTTTCTAGTGATCGAGTATGTGAATGGAGGAGATCTCATGTTTCATATGCAGAGGCAGCGGAAGCTTCCAGAGGAACATGCCAGATTTTATGCTGCTGAAATTTGCATCGCTCTCAATTTTCTGCATGAGAAGGGCATTATTTACCGGGATTTAAAACTGGACAATGTACTATTGGACCAGGATGGCCATATCAAAATTACAGACTATGGCATGTGCAAGGAGGGAATCAGACCAGGTGACACTACCAGCACATTCTGTGGGACGCCCAACTACATCGCCCCAGAGATCTTGAGGGGGGAGGATTACGggTTCAGTGTAGACTGGTGGGCTCTGGGCGTGCTCATGTTTGAAATGATGGCAGGCCGATCTCCCTTTGACATCATCACTGACAATCCTGATATGAACACAGAGGAATATCTCTTCCAGGTCATTTTGGAGAAGCCGATACGGATTCCCAGGTCATTGTCTGTTAAGGCTGCGAGCGTGCTGAAAGGCTTTCTAAACAAGGACCCAAAAGAGAGGCTGGGATGCCAAGTTCAGACCGGATTCACAGACATCAAGTCTCATACATTCTTCAGAAGCATAGACTGGGACCAGTTGGAACAGAAGCAGGTGACGCCACCGTTCAAACCTCAGATCACAGACGACTACGGTTTAGACAACTTTGACACGCAGTTCACCAACGAACCCGTGCAGCTAACACCAGACGACGAGGATGTGATAAAGAGAATAGACCAGTCTGAGTTTGAGGGATTCGAGTACATTAATCCTCTGCTGCTCTCCAATGAAGAAACTGTATGAGGGAAGAACAATACGGCTGATGTTTCTCTGCCTGCGGCTCCACAAGACTACTACAGCTGAGTTTAACTCAAACTCAGACATGTGTCACACAGAAGAACTTTTCCTTAAAACTGTGTTAAAGACAAAAAGCAACACTAAGACTTCAAGTTTTGGACCCTGCTTGAGATATTTTGGGGTTACACTGGAAGACGAAATGACTGGAGGACCTTCAGAAAACAAACTCAGAACTTTTCCCCAAATTTCAGCTGTTGATTGTCTTCCTGCTTCCCAGCATCCTCTTTAATTTTCACGCCCATGTTTATGTGTGCGCGCGCACTGTTGCCTGGGACTCTAGTTAGTTCCTTCGATGTGTGCCTGCGTCCATCAgagactacatttcccatcaacCATAGCTAAATATGACTAACTTaatgtgcactttttattttgtttgattcctttttttttttctttaatcttgTATGAGGCTCGTCCTCAAGCGAAACAAGAATGTATAatgtttaaagataaaaaaggaaaaaaaaaaaaatgttgtattataGTGTAGGTAGCCAATCGAAGAATTTATGATGCCTTCTATGATGCAAAGTGGCACATTTTAATTCATGACCATGATGGTTTCATCCACAGTGGGTAGCTGTGCTTCAAACCGCAAGCTTTTAACCGCCCATGTTGTATTTACAGAGTAAATGGgagataaaaatgtgttttttgaagaaGTGCCTCAAAGATCCAAAATTCACCATGCTCCAAACTGCTCTTAACTCCATGTTAGATTGGAGTTGGTTGCACCATCCAATGAGAAAGTGGGCTGCaggtgttattattattattttttttttacataacacaaacacactgatgcatatgttgaaataaaacattaaagttaGACACTGAATGATCACAGATACATCAGACCAGCAGCAATATAACCAACCTAGGTTTATTGGAAAAACGTTCCTCTATCCATGTTTTTGCGCAAATTATGGTTTTGGGGCAGATTACTAATttataaggatttttttttgcacacttcCTTGCATGATACTTTACAACCTCGAAACACAGTACGGTGCATgatttgtaatacattttaaaatttgcacCACATGACCTGCTCCATACGTATGGTTTTTCCACACGCTAAACTTGCTCGGTAGCTCACCCGGTACAGCATTGCACTAGTCTTAGACGTGTAGAAGCTAGCTAAAATCACATATTTGCTTCATTTATATCTAGGGTGAGTATGTTGTCCTCGAATGCGATTAGAGAATTAATCTCAGTTTTATTTACGAACCACtacattccaaaaaaaaacaagcaacgTAAAACGCTGCCAGATTTACGTTCATCTATCTCACGTAAAACATTTCATGTTGAGTGTGACGAAATCATAATAtcattttgcataaatgtcgCCATGGGGCACGtttttttccaatgagcctgggTTTAATATTACAGTAGAATTTAACACAAACGCACACTGTATTACAAAAATGGCCGCGCCTCTCTCTGATAAGAGGGTTTTGTGTCGTTGTACTCATGTTGGTCTGTCAATAACGTACTGTCTGAGACATTGTGGAGAGCGAGAGAACACAAACAAGTGTTTGTACGTTATGTCGCGGTAAAATTGTGCAACAGTGATGTGACTGAATCTCAGATGACCTAAACGCACGGTGCGAGCAGTCATTGCAGTCGCTTAAATTGAACCCAATGCAACACTTAATATCAAACACAGTTAGCGCAGAATGCTAATCTTGTATCATTCGGTGGCCGCTTGTTCAGAATGGAGTTCTTACTGTACTTGTAGAATATACTGTATTCTGtctactatttttattaatagtaggTGAACGCTTTTCAGACATTAGCAAACTACACTGTCACGTTACCTTGTGATGTTGCATATAAGCGACtgatatttagtatttaaaaaaaactattttgtgtaaaaatgctgtgAGTGTTTACAGTATAGcgagacaggaaaaaaaagaaagagttggAAATGGAAGATCAAGTTGTGTgtattgcattgtgggatatgtTATTCTGCGCTGTGTGTGTCTTGGCAAACGTAGTAGGTCATCTGGGTATCCCATGCATACTGTGCACAGTATACGTACTGCAGAGATCGTGAGAGTAGCATGTTAATAGTACACTTCTACACGCAACTAAACCGTCATGTCTATTTAAATtccaaaccacacacacacgcaaaaaaaaaaaatcaaaaaattaacTTCAAAATCCGTAAATTCcctttaaagagaaaaacagccaatcacaggCTAGCTCGACTGATTAATCCCTCACAGCGATAAGGTATTGTGTTATTAAGAAACTAGATATGTTTTCTATCTTCCATTGCATTTAAtctcccaagttttttttttttttttggtttttttggttCCCCTCTTTTCCTGAAGAGCGAAGACGACACTCTCAGATGTGAATGCTTTGATGAAATCAGACCTGTATGAAGAATTGCTGCCATGTTAACAGGATTAATTAGCTGCTTTTGTGTCAGACAGTAGCGAGATTAGCAGACGGGCTAAGAACAAAGAGCGGCCCGGGAGATAACAAGCGTGACGAACGAAACGATAACGAGGCAGAGAGCAAAGCCAGATTTCCCCACCGTGTTTTCAGCTCTCTAATGAAAAGCCGGTACAAAAACGGGCACAACATTTTGACGAACTCCTCCATTTATGAACGATCGTTTGCGACAGGAACTTCAGGTGAATGCAAACTGCCGACAAGTGGCATTCCAGTACAGTTTGACAGGGCCGTTTTTTTAAGGTAAAGATGTGGTCCTACGCAAAATTCGCCCGATTTTCATTCCTGTACGCcagtggttatttttttttgcaaactgtATGAAAAACAGGTACTGCGGTATATTACAAAGGACCAAGTAATAAATCATCTTCACCAGACCAACAGCTTAATTTTCCACCGGGCTTGAGCTTAATGTACAGAACCCACGTGAAATGGTGTCAAATTCACGATTGTCCTTTTGTTGgggttttattcatgtttatatttgagCTGGAATGAGTTTGGCATAATTGTAAATATGTGTAATTTAACCCTTAaaattttcacagaaaaaaaagaaagaagtaaaTCTCGTTTCTGCATCATTATAAGAGATATCTGAATCCAGTGTCCTAGCCGCTAGTCTCAAACTTAGAGCCCAAGACTGCAATAAAATACGAGTTCCTGTCcctgaaaacattttaagcaagAACTTTCTGTTATTTATCAACTTGCCAAATACAAAAGATGTCGCAAGCCGTTTTCTGCTTATGTTTCTTTTTCGGTTTCCTTACGTCGAGTCCAAAGCAAATGACGCTCTTAACGATGTGCTACAGGGgaatacttttatatttgaagtgtttgttttataaattattgtaaatgaaaGCTCTAGTAGAGTTTCTGTGGGCTGAGGGTTGGGAGAGAGAGATGTGAACATGTCTTTTGGTTTTATGAAGTTAAGTCTTAAGCATCTTAGATAACAACTGTAAATCAGTAAATGTTCATTGTACTGAC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007097 nuclear migration biological_process
GO:0048699 generation of neurons biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92069 lncRNA downstream 80403 8712223 ~ 8739953 (-) False LOC122350893
XR_006251637.1 lncRNA downstream 80425 8712037 ~ 8739931 (-) True LOC122350893
TU92070 lncRNA downstream 106924 8712223 ~ 8713432 (-) False LOC122350893
TU91990 lncRNA downstream 312233 8507891 ~ 8508123 (-) True G62120
TU91913 lncRNA downstream 390221 8427285 ~ 8430135 (-) True G62076
TU92189 lncRNA upstream 15446 8913482 ~ 8914004 (-) True G62239
TU92177 lncRNA upstream 20722 8918758 ~ 8920904 (-) True G62235
TU92191 lncRNA upstream 23445 8921481 ~ 8921696 (-) True G62241
TU92194 lncRNA upstream 38042 8936078 ~ 8942201 (-) False LOC122351086
XR_006251681.1 lncRNA upstream 40282 8938318 ~ 8942255 (-) True LOC122351086
XM_043246846.1 mRNA downstream 11757 8746887 ~ 8808599 (-) True skia
XM_043246672.1 mRNA downstream 163070 8652304 ~ 8657286 (-) True pola2
XM_043246677.1 mRNA downstream 170373 8647270 ~ 8649983 (-) False mrps36
XM_043247251.1 mRNA downstream 214190 8600995 ~ 8606166 (-) True rab3c
XM_043247026.1 mRNA downstream 339625 8478681 ~ 8480731 (-) True ndufaf2
XM_043246899.1 mRNA upstream 24657 8922693 ~ 8934751 (-) False st6galnac5b
XM_043246900.1 mRNA upstream 24657 8922693 ~ 8934744 (-) True st6galnac5b
XM_043246901.1 mRNA upstream 24657 8922693 ~ 8933840 (-) False st6galnac5b
XM_043247484.1 mRNA upstream 74757 8972793 ~ 8975940 (-) True LOC122350776
XM_043247006.1 mRNA upstream 93307 8991343 ~ 9001962 (-) True tnni3k
XR_006251592.1 other downstream 163070 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 170391 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 170391 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 390582 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 390812 8429474 ~ 8429544 (-) True LOC122351131
XR_006251623.1 other upstream 359916 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 1056714 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 1063761 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1491147 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1542728 10440764 ~ 10478685 (-) False G62826

Expression Profile