RNA id: XM_043246747.1


Basic Information

Item Value
RNA id XM_043246747.1
length 5453
RNA type mRNA
GC content 0.52
exon number 30
gene id LOC122350349
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10826429 ~ 10961990 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAgccactttattattattaatattttaatgaccaCGGCTTCAGAATGTGTAGGTACACCACCGAGCCACACGATGGCGGTATATGGCAGCCCTGCACTTCTCTTCTGCAGGAAAGCGCCAAAACGCTCTTTAATTCACCCTGGCAACGGCTGACAGACGCTATGGCAACCACTACAGAGAGAATCCCTTCCTGATTACTAGCTGAGCccgttttttttccattacatgTAATATGATTGTGAAAATAACAGCGTGATGAGCGTTTGTCAAAAATGACAGAAGTAGTTattctgtaaaattagcccaacTTACACGCGACATGCGTTAGcagcagaaaagaaagagagttgTGTCCTGCAGAGACTGAAATTAATGAGCAGCCTAAAAAGTCTCTGGGTGATTTAGCGTCGCATTTAGTCAATATTCCgcgtttttaattaaataacaagcGCTTAACTTCGCCTGCGGGGATGATTTAACAACCTGCGAAACCTTTAGGCGTTTTCAGGAATGTTTGCCAGGGGACATTAACGCTTACTGACCGACTGACCCCTTTATAGAAACGTTCCGCGGTCGGTTGATAATTCTAAAGAAACCCGCACATGTCTGACTGGAAAAGCGCTTTCTTGAGGAACCGCGTGATCCCGCCTCACAGCCAAACAGCCAGACAAGCTCCAGGATCTTCTCAAGGTCTTCAGCTGCTCTTCAAACAGATAGATGGACTTCACCTAAAacagTCAGAGTCATCGCCATCACTCCAGTATCAGCTGCGTGTGACCCTGTTTGACTCGGGTCACCAGCACTTCTTGCGCACATGGAAGAGCGGCTCACACTCTGTCAGTGGCGTACAGGGTCAGAGCGGTCGAGTGCTCTTCAATGAGGTTGCATACTTCCACACTTCCTTGTGTTTGAGTTCTGTGGTGGCAGTGGTGGAGTTGGTTACTCTGTCTACCAGGGCAGACAGTTCCCAGGATGCACTGGGGTCGGGGTTTGGACTGCTTCAGCTCTTCACAGGTCGCGCAGACACCGGCATCTCTCAGGGGGAGGGCAGGTTGACTCTCTTCAGTGGGACCCCTAGAGCCCTCTTTCACCCGATGCTGAAAGACCCTTTACAGTTGAATGCTGTATTATCAGTGATGGAGGGCTGTCAGCTGCTTTACTCCATACAGCCACACCCAGCTCTCACTCCCATCATGCACCTGCTCCCGCCCAACATTTTGGTGTCTGGACATGACAGCGTCCCCGGTGTGCTGTCATCTGCGGACACAGGCACAGCAGATGTGCTGCGGAAGCCTCGTCTGTTGAAGAGCTTCTCGTGTGTGTTGGAGGGACTACGTGTGGCACTCTTCCCCTCCGTGGAGGTCTTCGAATCTGACCTGCTCCAGCTGCTCAACAGAGACTGCCAGAATACAAACAGGGGTGCGGGGGGACGCTCGGTTGTGGTGCAGGAGCGCAGGCTGCTGGTTGGGGTCCACAACGGCTGGGGCTGGGTGGAGAAGCCTCATGTGTTTGTGCTGGAACGTGAGGCTGCAGGAAGCGGAGCGGCCAGGGCTCGAGCAGCCAGCGCAGGAAGCAGCTTCAGGCAGACCTCCACGGACAGACTCAGTGATGGACTGTCTCTTCGTGGCAGTGTGGAGCTCAAGATGATGAGGGACGTAGCTTTCAGCATTGTCTTCCAGCTCCAGTATGTTTTCTCTTGTCCACTGGCTGGAGATGGGCAGATGACAACCACAGCTGTGCCCAGAGCAGCGTTTATGCAGTGTGTGCGTTGGTGTGCTTGGAGTCTGTTTTCGGATCCTGAGGGTCCCGGAGAGAATGTGTGCCTCCACTTGCAGGGCGGTGCTCTCCCCAACCCTTGGGGTGTCATGGTCTACTCTGCAAGCACACAGCAGACATATTCGGGGAAATCTGTCATCAAATTCAAGTTTTCATCTAGTGTGGAAGGAGCTTCTTGCAGCACGGCATTGAAAGTGAGCCACCGGGAAACATCGCCACCTAAGAAGTTACTTTCAGCATCTCAAGACGAACGGATCTTGGAGCCTATGGTTTCAACTGCAGAGTCTCCACGCGGCCCAGCGCTGCCTCTCTCTCAGCTGGTTGCGACTTCACGCTACCCGACCATGAGCCACACGGTAGGGTCTCCATGGCAACAACAGCTCCCCTCTCTGCTTTCTCCCTCCCCGATGGCATCGGCCCACCAGCTGTCACATGTCGAGCGTCCAGTTGCCGGCAGCATAGCTCATCTGGAGCTGAGTgtgcaggagagagagggaaatagaagtgaggaagaggatgagATGCAGGAGCTGACCTTCACTCCAGTGCACGCCCCTGTCATCACCCTCGGAACGCACGCTTCTGGCTCCTCCAGATCGACCTCCCGGAGATCTTTGGCCAGGCTCTTCTCCTCTGGTTTTCCTCAGATCCTGGACAGTCAAAACCAGGTTGCTGAGGTTCTGGATCCCTCTGAGCCTGTGAACTTTAACCCCCAGAGAGAAGAAGCAGATCCTCTGCAGGCCAACACTCTCATCCTTCAGTTCCTTGCTTTTACCAGGGTCCCTCAAGCTGGAGTGAATTCAGACTGGCCCAGCACTGTCCATTTCAGCTTCCAGCTTTACCGCTTCCCCCCTGTCACCACCGAGCGTCTGAAGCTGCTTGACCCAGAGAGGAACGGCAAGCTGAAATCCAGCTCTGATTACCCCTGTGTCCTCTCTCTTATCAACAAGGACGGCACACTCAACTCTGGTTGTCCAGGTCTGCAGCTGCAGTACCGAGTTGACCCACAGTTCCTCAAGTCTGGTGAACGAGGCTGGTTCTTGCGATACCTGGCGCTCCACTCCCTGCAGATTGATGTCTGGGACAGTGAATCTTTAATGCTGATTGGCTCAGCTGCTGTGGAGCTAAAGCATATGCTGCGTCAAGGCCGCGCCGCCGTCCAGGTGAACCATGAGCTGGAAGTGATCACTACTGAGTACCTGCAGGATGCCAACTTTGCCAGCAGGCATGACAACAAGCACAGCGCCACTCCAGCCATCAATGTCTACACTACCGTAAAAGGAATTCTGCATTTGCGGCTTGGCAACGTTGGTGGCAGTGTGACAAATTCCAAGAGCTCTTTGGCTCTTCCTCCATCGCTCTCCCATGTGGTCCAGCCCAGCGATGCCCCTCAGGGTTTTGCAGGAGGAGGTGTCCCTGCTTTAGCTGTCCTCCAGCTTAACGCAAGCAATGCCAGACGAGCCCGCAGATTGCCAGAAATTGACAGCGAGCTGGCCAGACTGCTACAAAGCACCATGAGGGAAGTAGGCGGAGCCGCACTGCATCAGCAGGCCGAAGCAAAGGAAGTGCGCCAGAGGAAGATTGACAGAATGGCAGCTGTCCGTCAGCACGAGGAGCAGAAAGACCCGCCCCCTTTTCAGGACGGCTCAAACATCACGaggcATCGGGCAGAGCGTGTACAGCACTCTCGCGACCTTCGTGTGATTGAGGCCTATCGTGAGCGCTGTAAAGCGCAGGAGATCACCAACATGCTCTCTCAGGCCATCACTACCAAACACACTCTCTACGCCACGCTTGGAACGGCAGAGTTCTTTGAGTTCATGCTCAAGAATCCCTTCAACGTTCCTCAGACTGTCACCATTGAATGTGATGACCCAGAGCTCCGTGTGCTCGTGAAAACTGAGGAATGGAGATATTTCAAGGAGTTGACAAAGACTCTGACTCCTCTAGAGGAGGAGATGTTTCACCTAAATGAGAGTACACAGACTCCACAGGTCTACCTGCGGCCCAAAGAAAGCGTTCATGTGCCCTTCAAGTATCAGACCTTCATCTGTGGTCACACCTTCCCTATTCAGGATACAAAAAGCTTAAAGACTTCAAGAAGTCCACAGATGGCTCAGAAACATCTGTCCAATACAATTCATGCCAAATCCATCAAGGTGCTGTTCCGAGGAGAAGACAGAAAGCCTCTGGCGATCTGCCAGGTGGATGTTGAACCCACGCCACATGTGGTGGACCAGACCTTCCGATTCTACCAGCCTGAACTCACCTTCCTAAAGAAGGCCATTCGCCTGCCTGCAGCCTGGGACGACACAGCAGATGGTTGTGCCACCCTTCATGTGCGCTGCAGCGACCCCAATGTCATCTGCCACACCACCAACCTGAGTCCAGGAGAACCACAGGATATTTTCCTGAAAGTACCTGGCAGCCCAAGTCCACAGATTAGGAAATTCTTCATAACCATTTCCACTGACCCTTGGCTGGCCTCCCCTGCGCAGATCTGGCAGGTATACGTGCATTACCTGCAAAGGATGGActtgagctgtgtgtgtggcaCTCTGAGCTGGCATTCGCTGGTTCTTCACGGCACACAAGCCATTCGCAGGGTCAAGTGCTACACGTCGCATCCCCTCGAGCTTCAGGTGGACCCAGGTGAGGTTTTTGCTCTTCCTGCTCAGGGAGTTCAGGATGTCTGCGTGGGCCTGAGGGCTCTGCGCCCTGGAAGCCGTTTCTTTTACCTCAATGTAGTGGACGTGGACACTCGGCAGCTAGTTGCCTCCTGGCTGCTGTGCATCACATGCCGACAGCCTATCATCTCCAAGGCATTTGAAATCAGCGTTCCTGTAGATGGAGGGAAGGGCAGCAATAAGAAAATCAGTTTCACAAACCCCTACTCGTCCTCCAGAGTATTCAATCTGCGCACAGATCGCCCAGACCTGCTTCAGTTTAAAGAGGAGCAATTTCAGattGGGGGAGGGGAGCTCTACACCATCGGCTTGCGCTTTGCGCCGAGTCAGAACCCTGGCATGGAAGAGATTCTCATCTTTATCAATGACAAACAGGATAAGAACGAGGACACTTACTGTGTTAGGGTTCAGTACAGATAACACTACACTATCACCCTCCATTACAACTGCAGCTTCTGCCCACAAAAAACAGACTCGATGTGGTTTTACTCCCATCATGTATTTTTGCTTATACGGTGTGATAAGTTGATCCAAATAAGATATGTACTGAAATACAGAGCAAACATACtctatatataaatgcagaGAGCAAGTAAGGTTAACTCCATCTAGCTCATCGGGTACACGGAGTGAAGCGTCTTTCACGTGTGCTGGAGTAAAGCTACCCTGCGGTGCTGCAGGCTGAAACCGAGAAGAGCTTCTGATGCTCATATCGGCGCtcttgatgtgtgtgtttatcattaCGCTGAATCCCCGCTGTGATGTGTCATTAGCAGCGGAGAGTGGATGGCCACTTGCCCAGGACTTCAGCTCTAGATCTTCAAACAGTGAGATGTGTTTGTATGACCAGTCGTTTTAATTTATCAAGTGTTCAGAGTGTTACGTTTGCGCTCACTGACAATAGAGTGCTTAATTTGGGGGAAGAAAATAGACATCCTTCACtctttttgctgtattttttgtactagcatcaataaaaaaaagtctct

Function

GO: NA

KEGG:

id description
K16478 NPHP4; nephrocystin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251671.1 lncRNA downstream 1378 10819217 ~ 10825051 (-) True LOC122351000
XR_006251661.1 lncRNA downstream 26466 10755389 ~ 10799963 (-) True LOC122350960
TU93075 lncRNA downstream 69517 10756533 ~ 10756912 (-) False LOC122350960
TU93074 lncRNA downstream 70423 10755654 ~ 10756006 (-) False LOC122350960
TU93067 lncRNA downstream 128304 10696335 ~ 10698125 (-) True G62861
TU93215 lncRNA upstream 169680 11131670 ~ 11169473 (-) True smim1
TU93235 lncRNA upstream 235163 11197153 ~ 11205373 (-) True G62974
TU93238 lncRNA upstream 239705 11201695 ~ 11210161 (-) True G62977
TU93256 lncRNA upstream 314369 11276359 ~ 11276914 (-) True G62992
TU93312 lncRNA upstream 444964 11406954 ~ 11441818 (-) False G63014
XM_043246124.1 mRNA downstream 293091 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA downstream 293091 10529443 ~ 10533338 (-) True LOC122349966
XM_043246120.1 mRNA downstream 297712 10526347 ~ 10528717 (-) True LOC122349964
XM_043246165.1 mRNA downstream 335229 10487790 ~ 10491200 (-) True LOC122349990
XM_043247531.1 mRNA downstream 487760 10329776 ~ 10338669 (-) False gls2a
XM_043246750.1 mRNA upstream 2592 10964582 ~ 10968087 (-) True c8h1orf174
XM_043246050.1 mRNA upstream 11315 10973305 ~ 10990735 (-) True cep104
XM_043246052.1 mRNA upstream 134150 11096140 ~ 11131238 (-) False LOC122349915
XM_043246051.1 mRNA upstream 134150 11096140 ~ 11131238 (-) True LOC122349915
XM_043246054.1 mRNA upstream 172713 11134703 ~ 11137541 (-) True LOC122349916
unassigned_transcript_1293 other downstream 286138 10540219 ~ 10540291 (-) True trnar-ccg_26
TU92984 other downstream 347744 10440764 ~ 10478685 (-) False G62826
TU92903 other downstream 434386 10389183 ~ 10392043 (-) True G62760
TU92747 other downstream 856944 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 864728 9954750 ~ 9961701 (-) False mllt1a
TU93206 other upstream 25456 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 135012 11097002 ~ 11131207 (-) False LOC122349915
TU93259 other upstream 361914 11323904 ~ 11345858 (-) False LOC122350269
TU93421 other upstream 600288 11562278 ~ 11564405 (-) False G63095
TU93424 other upstream 600288 11562278 ~ 11564405 (-) False G63095

Expression Profile