RNA id: XM_043246757.1


Basic Information

Item Value
RNA id XM_043246757.1
length 4672
RNA type mRNA
GC content 0.42
exon number 10
gene id rorca
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9353668 ~ 9366787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCCACGCGCCGAAAGTAGGTTAGACTACAGAGAAGCACAgacgcagagagagagggaaagagaagagGGCATCATTTTATTCCATAGCTGACAGTGCGCGCATTTAcgcagggaaaaaaaactatgatgGAGCGGAATTTATTCTGAACAACCGTATGAGAAGAGCAAGTTGACTGGTATAACTTACCAGGTTTAATAGTTATTTTCTTGCAAGCGCTCTGTTTTGGAGTTTTCTGAATTTTTCCCGAGTTTAACTTTCGGCGCTGATCAAATGTACTGGAGTTATATTATCGTTCGCAGATAATATAGCATCAAAATGAGAGCACAAATCGAAGTAATCCCATGCAAGATTTGCGGGGACAAATCATCAGGCATCCACTATGGGGTGATCACTTGTGAAGGCTGCAAGGGCTTCTTCCGCCGAAGTCAGCAAAACAATGCGATATACTCCTGCTCCAGGCAGAGGAACTGCCTTATTGACCGAACAAATCGCAACCGCTGCCAGCACTGCCGCCTGCAGAAGTGTCTGGCATTGGGCATGAGCCGCGATGCGGTGAAGTTTGGACGTATGTCAAAAAAGCAGCGCGACAGCCTCTATGCCGAGGTTCAGAAGCACCAGCAGTCTCAGGAGCGGGCAGGGGCTTTAGGCAATGGTGTACCCGGTCATGCTGGTGATGAGGTCGGGGAGAACGGCAGCAACCATGGCCGAGCCTACAGTCGGGGCTCCAGCACCACACTTAGTGACCTGGATGATATAACCACGCTACCAGATGGTCTTCTTTTTGATCTGCCGCTCACTCCGGAGGAAGCTGCTGACTACTGCAGCCTGGAGTTGCTGGGAGGAAGCGGTGGGAGCAGTTCGTCCTCGCAGAGTTCTCCTGAGACAAACAGACAGGAGTTTAGTGACACAACACACATCAAACACGAGTATCAGACCCTGCACGAGACGGGAATTTACACTCGCTCATTTCTTAACCCACCTGAAGGCTGTTCCTTGATGGAAATTGaacggATTACACAGAATGTGGTAAAATCCCACATTGAGACAAGTCAGTACAGCACAGAAGAACTGAAAAGATTTGCTTGGACACTCTACACACCTGAGGAGATACGTGTCTACCAAAACAagTCCACAGAGATTATGTGGCAGCAGTGTGCTGTGTACATCACGAATGCCATCCAGTATGTGGTGGAGTTTGCCAAGCGCATCACTGGATTCATGGATTTGTGTCAAAATGACCAGATTATTCTTCTCAAAGCAGGCTGCCTGGACGTGCTGTTGATCCGAATGTGTCGGGCCTACAACCCCATCAACAACACACTATTGTTTGATGGAAAGTTTGCAAGCCCTCAGCTCTTTAAAGCTCTCGgTTGTGATGATTTGGTGGGTGCTGTGTTTGAGATGGCTAAAACCGTGAGTCGACTACAGCTGTCTGAAGAAGAGATGGCTCTCTTTACTGCCACTGTGCTTCTGTCTCCAGACCGTCCTTGGTTAACAGATGCTCAGAAAGTGCAGAAACTTCAGGAGAAGGTCTATGTTGCGTTGCAACACTGTCTTCATAAAAGTGGTGCTCCTGAGGAAAAACTGGCAAAGATGGTGTCCAAGTTGCCTATGATGAAGTCCATTTGCAACCTCCATATTGATAAGCTGGAGTTTTTCCGTCTGCTTCACCCAGAAACGGCCTACAACTTCCCTGCTCTTTACAGAGAGGTTTTCTGCAGCGAGATCTCCTTCCCAGACTCCACTGAGGGCTAACAGTCATTGAAGTGTCATATTGGCTCTgatgagagacagaaagaggaagagagttAAAGAAAGACAGGGAATGGAAATAGGAGGAGGTAGATGGATATGTGTTTGAGGAAAACCAGCAACACACTGACAATCTTGCACGTTACACTTTACGACTCCATCTATAACCTCCCTCCTGATGGAGTGATTCACTCCTCTATTTGAACAGGACCCAGATTTCTTACAAGACGCTGTTAAATGTCAGCAGTCATTTAAGGTGCTGGTTACTATTACTCATGCTACCTACATATAATGACTCAAACAGAGTAAAtgatgtatatttaattaaaaagagtaCTCGATTAAACTTGGAGCTCAGATCTCCCTAAAAATTAAGTGCTTGAAAAGTGGATCCTTCTCATTTTGCGGGTACTCTTAGGAAGAGAACTATGAATGTAACCCACCTGACGTGGCAAAGCCTCAGGATTAAGACAGAATGTATTATGTATTCCTGCCCCATATGTAAAGCAAGCTCTTAAGGATGGTTTCTTTAGACAAACAGTTTTGAATCCATGCGAAACTGTTCAAAGGGACCAGTGCATACACACCTGAGGTTGTAAATGCCACATGAGCACCTTCACTTTGACAGACTCAACACTAACGCATAGCACACTGCACAGACCACATGTGTACATGGTGTGTTGTCTTCTGAGctctttatttttgcatataaatttaAAAGATGCAACTAAACTAATGAAAACCTCATCCTTATTACCCTTTCCCACACAAATGCCACTTGGATAAAGATATTAGACAATATTTTGTTATCCATATTTGATCGGAAACCACATGTATGTAGATTGATAGATGTAATTgagaatatatttataaacggAGCCTGTAGATAGCACATGTAGGcagagatataaagttgcaccTTAGAGTGGATGTTCTCAAGCCCTTTCAAAGACTTCTCAACTATAGGAGTGGAATTCTGGGCTGGAGATGGAATTGGTGTGACCAGCTTTCGATTTAGAGGCAGGTGGATGGCACTTAAATACTCCACAAAGAAAGGACTTCACAGGAGCAGGACTTTGCTGTCGCCTCACATTAGATGGCAAAAAGACAATGCCTCTATGAGACTTTCTGAAGTGTAGCAAACCACTCATACGGCTGCTGGGAGCAAGGCCTCAGGAGAACACAAAGAACAGTGGATGGAAGGAAacgtatattttttttttttagagacaACAAACAACCTGAGCTCATCGTCAGTCATGAGGAGGCCACAGAAATGttgtaattctgacttttctgtTTCTACAGCTGTGAGGATAAGCGGATTCACAGGCCGTACCGTGCTTTGCATTGTGTCTGATGTGGGGATCAGTGTTGTGTTGCTGTGTGATTTGTTTTTCCCCTTCATCCATGTACCTTTGGTGTTCACTTATAGCACAACTATAGGTTGACAGAACCATCAGCTACCCCCCTGAGTTCAGGAATACTATGGTTTAGTTTATGTTCTGAAACTTTGCGGTTCAAACCTGAAAGAGAAAAATCTATCTACTCTCTGTCTGCAGTGTGAAAGCAGCCTTCGTTTTTCAGAGGCAGGAAGTCCAGATTGGTCTCAGGGGAGTTTGAGGAGTGGCCCAGAAACCAGAATACAAACTAAAAGCCCAAAGGAGGGCTTTTCAAACCCCGTTAGTGCCCAGCTTTGTAAGATTAAAGGGTATGAAAGATGTTTTGAACGATTGATAAGTATCAACGTCCAGTTTCCTGACAATTAATTTTAACAAGCTcgcctgatgtttttttttttgcactgctgGAACAGTGCCTAACTATATTTTCTTGTAAGATTTTATATGGTtggtatattacattttcacgTTGTTTAACGCAGTTATCACAGTGTCTGCCTGTGCAATAGTCAGTCTTTCCATTTTTAGTATCGGCAGCCCTCACAAGCCAAGAATCTCCTTGGATTTCATAAGCACTCCAGCTCAGATCGTTTAACGCCCCCTTGCTAAGTTCTATCAAtcctttttaagttttatttttttacgctTGTCTGTTAGCTAACTTAAAATGACGGAAAGTCAAAATGTGGAGAAAGATTGTAACAAAGTGCAaatactttgtaaaaaaaaaaaaaaaacatttttagagttTTAGATGATGTATTTTTGTGGAGTGTAATTCGCCACTCTACAAACTACCACAAGTGTCTGGCCCATCCTTGAGGGTAGTTCTGGAAGTGTGCGTTTACATCTACACTCATTCACTCAGGGAGATAGCTGGGTTCTCTGTCCTAAAATGTCTTCTTCAGTTAGCCTAGCAAGACACCTTGCACCAAATAGAAGACCTTAAAACCTTGATCACTGTGTACGGTAACTTTTCTTGTGAATGTTAATCGCAGAAGTATCAAAGAATTTTACCCCTGTCTTATATCAGTGCTATTGGAGGACTTTTTCAGTTtgactttcttaaaaaaaaaaagaaaaaagaaaaaaaaaagaataggatCAAAActaaggtatatatatatatatatatggtagaTATACAAGGAtgaatttaatctttaaatctagtgttgtgtttttttatgtttatttttgtgatattttctttcttaatttctGTCCTTTTCTGTAACATCACCCGTGTAGTGTCGTCCTTTGTCTTGAAGAATTAAAAtcctatttttttaaagagcattttTAAGCAGAAAATCCCCTACAAGAGTCCTAATTCTTTGCCATGGTCCTCCTGTGGttgtttcagtttaaaataaatcatattatagATTTTAACGAATATAATTTATGGTGTTATGGATAcagagaataaaacaaacacattaaaatatattattgtacaaTAAGGATTACACACATGGATTCCAGAATGTAATAAAGGTCTTTTTACTTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92265 lncRNA downstream 268474 9082795 ~ 9085194 (-) True G62293
TU92203 lncRNA downstream 314968 9030865 ~ 9038700 (-) True G62250
TU92206 lncRNA downstream 315204 9030865 ~ 9038464 (-) False G62250
TU92223 lncRNA downstream 346563 9006834 ~ 9007105 (-) True G62263
TU92222 lncRNA downstream 346889 9006555 ~ 9006779 (-) True G62262
TU92550 lncRNA upstream 41627 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA upstream 41627 9408414 ~ 9414439 (-) False G62519
TU92557 lncRNA upstream 159840 9526627 ~ 9526966 (-) True G62525
TU92615 lncRNA upstream 336172 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 336589 9703376 ~ 9703598 (-) True G62565
XM_043246925.1 mRNA downstream 1114 9335682 ~ 9352554 (-) False sh3gl1b
XM_043246923.1 mRNA downstream 1114 9335682 ~ 9352554 (-) True sh3gl1b
XM_043246924.1 mRNA downstream 1116 9335682 ~ 9352552 (-) False sh3gl1b
XM_043247590.1 mRNA downstream 24480 9321262 ~ 9329188 (-) True stap2b
XM_043246885.1 mRNA downstream 48327 9300474 ~ 9305341 (-) True cpox
XM_043246890.1 mRNA upstream 11704 9378491 ~ 9490669 (-) False sema6bb
XM_043246892.1 mRNA upstream 11704 9378491 ~ 9490668 (-) True sema6bb
XM_043246894.1 mRNA upstream 11704 9378491 ~ 9490667 (-) False sema6bb
XM_043246891.1 mRNA upstream 11704 9378491 ~ 9490667 (-) False sema6bb
XM_043246895.1 mRNA upstream 11704 9378491 ~ 9485737 (-) False sema6bb
XR_006251623.1 other downstream 90842 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 696382 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 703703 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 703703 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 923894 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 587963 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 595010 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1022396 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1073977 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 1173432 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile