RNA id: XM_043246890.1


Basic Information

Item Value
RNA id XM_043246890.1
length 7881
RNA type mRNA
GC content 0.46
exon number 19
gene id sema6bb
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9378491 ~ 9490669 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAATTAATTCCGCTCCAGTCCGCAGCTCTATTCTGCGTCAGGTTTTGGCATTGACTTGCGTTTGAATAGCTGTGGGTGACAGACTTACAACAGCGCTGAGATAGCAAACGCGTGATCTTTCTCTTTTAGACCAAACGCTCCAGGCTGCACGCCGGGGAATGCTGGAAATATTACGCTTCTACCGGACAATAAGAGTTTCCTTTAACAAATTCCAGAGGCTGGACTCCTCGAATCGGAGGCAGCGACGCGCGCACCAAACAAACGAACGTGCCTTTTTGTCCACGCGCTCAGGAGCGTGTTCGTTCTACTGGCGCAGCACTGAATAACTATTGTAGCGGTAGGTGACTGATAAGGCAAGTGTATCCAGCCCAGACGGACACGTTTTCATAAAGCACAGCTGGTTGCGCTGGCGTGGACTGTTTGTGCCATCATTTGTTAGACATACGGCAGTTTATCCCCGCTTATTGCAAACGACTTCTTGGATACTGGATGGCTGTCCGAAGGGGAATACAACGGCTGCAGGACCAAGCCGGGAATGCCATTTGTTCACGAGCTGCATAAACGAGCTTTGTTGCGCGGTGTTTTTACCCGGGGACAGGTGTCGTTGTGTACGTTGGGGCAGGGGTCATTCTGGATTATAGTCCCGAGGAGGCGAGTCATTCAAAGAGAACCGGGCTCACCGTTTCCCGCGGCTGTTATCGgtgagtcatagaggtttggaacagcatgaggTGCCGGAGCTACTCTACCATGACGACTGTGGCTAGATCTTTCATCGGGTTCTTCTGGCTCCTGCGGTTGGTGTGTGCAGTGTTCCCTGAGGAACCGGGACCTCTGAACTTTATCCCCACTGAAGtggtgagaaggtaTCCTGTGTTTCTCGGTCGACCCCATCGCTCATCACTCAGACAGGAGCCTTTACACATTCAGAGGATCCTGCAGGTCAATCGTACCCTTTACATTGGAGCCAGAGATGACCTTTTCCGAGTGGAGCTGGACAACGTGGTGGGAGAAGAGATGTTTTACAGCAAGAAGAGGACATGGGAATCCAACAAAAATGACATCAGAATCTGTAGAATGAAGGGAAAACATGAGGACGAGTGCCGTAACTACATGAAGGTTCTGCTCAGCCAACAGGGCGGATTGTTTATCTGTGGAACCAACGCCTTCAATCCGTTATGTGCCAATTATACAggAGACACTCTTGAGATGGTGGCGGAAACTGTCAGTGGAATGGCTAGATGCCCATATGACCCAAAACATGCCAATGTGGCCCTGTTTGCTGAGGGGAATCTTTACACTGCTACAGTGACTGATTTTCTGGCCATCGATGCTGTGATCTACAGGAGTCTGGGGGACAATCCCGCTCTCCGAACGGTGAAACACGACTCCAAATGGTTTCGAGAGCCGTATTTTGTGAGTGCTGTGGAATGGGGGCCGCATGTCTACTTCTTTTTCAGAGAGATGGCCATGGAGTTCAACTATCTGGAGAAGGTGGTTGTCTCTCGTGTGGCACGCGTATGTAAAACCGATCAAGGCGGTTCACAGCGTGTACTGGAAAAGCAGTGGACATCCTTCCTGAAAGCTCGGTTGAACTGCTCAATCCCAGGAGACTCGCACTTCTACTTCAACCTTCTGCATTCCACCAGTCCCATCATTCACATGCATGGCAGGGATATCATCCTCGCTGTCTTCTCCACACCCTCCAACAGTATTCCAGGCTCTGCAGTGTGTGCTTTTGACATGGAACAGCTGGCTGGAGTGTTTGATGGAAGATTTAAAGAGCAGAAATCGCCTGAGTCGATATGGACACCTGTTCCAGATGAGGTTGTGCCCAAACCGAGGCCAGGTGGTTGTGCCATACAAGGCTCCAGGTTCCATTCCTCCAATTCTTTCCCTGATGACATGTTAACTTTTGTCAAGACCCATCCACTGATGGATGAAGCCATCCCATCACTCGGCCAGAGACCATGGATTGTTAGGACCATGGTCAGATACCAGCTCAACAAAATGGTGGTCGACACAAACTCTGGTCCATACGGCAACCAGACAGTCCTCTTCCTGGGCTCCAGCCGAGGGACCATCCTTAAATTCCTCGTCACCCCCAACAGGGATAACACAGTGACCAACAACAACGTGTTCCTTGAGGAACTGGAAGGCTACAACCCAGACAGGTGTGGGACGGACTCTCCTCAGGCCAGGCAGCTGCTCTCTCTCACGCTGGACCGCATCAGTCACAGCCTCCTACTGGCTTTCCCTTCTTGCGTGATCAAAGTGCCTGTAGCACGTTGCCAACTCTATTCCCGCTGCATGAAGAACTGCATCGCCTCACGGGATCCCTACTGTGgctggaccagaggaagcaccTGCTCTTTCCTCCGTGCGGGTACAAGGCTTCCCTTCGAGCAAGACGTCGAGCACGGAAACACTTCTCACTTGGGCGACTGTGACGGTCTTCTGCAGGAGAGCTTCATTGAGGAACCAGATGGCTTGGTGTCCGTGAACCTGCTGGTGGTGTCAGCAGTTTCAGCATTCACCACCGGGGCGGCGTTGTCAGGTCTGATGGTGTGTTGGATAATGAGCCTCAAGCACCGCCAGCGCTCCAGAGCCAGTGGATCTGGCATGGGAAGCCGTCGCAAGAGTGACAAAGAGCAGAGCATGCTGGGACACGGCCGCAGTGGTTCGGTGATCAGCGTGACGCGTATCAGTGGCAGTGAACGACCCCGCTCGCAGGTTGAAAATATGTTTACCAACGGCTGGCCGAAATCTGGAGAGATCGACCCAGGACTTCCCACTCCGGAACAGACGCCTCTGCAGCAGAAACGGCCCACTCCTAACGTTCATCTCACAGACTGCGATTGGGACCAGACACATAATTTCCTCACTCAGACAGGTACTCCCTGCCCGGCGAACTCAGCAGTCATTTACTTTAGCTCCAAATACCTGCAAGGTGGACGGCAAGAGGGATCAGTGGATGTTCCTCCTCATTCGGAGCGTCAGCGGTACCTCATCCTCTCCCATCAGTCGAATCAGCAGGAACAGAGCGGGCGACCGTCCGCCCCAGCTACTTGTAACTCTGCTGGTGATTACAACTTTCTAGCAACACCTCAGGATGCCTCAGCTCCTACCACTCAGTCGGACTATGGAGAACACCTGCGATGGTCCCGCGACGGACTCAACTTCAATAGCAACAACGCGACTCCTTCTGGCCACCACCCATATCCCATACAGCCACGCACTAACGCTGCGTTAATACGGCCAGGTCACCACACTCAGCGGGGACTCAGTGAGATACAGGACTACAGCCACCTGCTGGTGAAAAGTGTAAGCGAGCGCAACCCAAATGGCCAATGAGTGGTCCAGGCCCGTTCACACCCTTCAGAGTCCCATCACCCCCAAGACTCAGACTCCTTCTGTAATCCTGCCCTTCCTGTCCTCTCTCACTGCCATCCAGCGTCTTTCAAGTCCCCCACCAGTGGCTGAGCTCTAGGACTACCGAGAGTGAGAGAACGAGAGCGTTAACAGTTGATGGTGTTAAAGCCGCTGTCCTCCCCCTGCCTGCGGGGTGACGCCACTTAGCACGTTAGCGGCTTCTATCACGCCCTGTCTAATGAAGCGGAAGGATCGCTTAGGAATAACGGATGCGTTGGGTGATGGGAGGTGAAATGCATAATCATAATCCTGCGAACGGCTACGTTGACTGTTTAGCATAGCGAAGCGGTTCCGGATTGTCTCTCTGTGTAATCTTAAACCCTGTAAACCATTCAGTGGAAGTGATCCGTTTCGTTTTCACCTCTCTTGCTTTACGTTTGCGCCAGCGGATGCTTCTTTTGTGCATCCCAGAGCCTTTGCAGACAAGCTCAAACTTCCTTGTGtctgtttgtatgtgtatgtgagcCACACCAAAATGGGGATTAAAATGTGCTTGTCGGCTAGACTTGATGTGAAAGCAAAATGGCCGACCAACACTGGAGTTTCTTAAGTGATCTGATGTCAAATGACTGACTACCCCTCCCTCCCTTAACCTATTCTGTGTCAGGAAGCAATCAAGACAACTGCCATGTGACTTTAAAGACTTGTGTGCTGGAATATCAGATGTAAATGGGTCATGGAAAAGAGCATTCGCCAAAAATCATGGAGGAATCAAACCATGCTTTCTGAATGGAACATGGAAGCACTGTGGAAATTACTTTATTGCATACAGGAACATGTTGTTGGGTGGACCCGTTTATTTTGTGATGTATCTTAAAAACCAAGATGCTTAGTATATTTGTTTATCCCCTACACATGCTAGAATTAGAGCAGGGCATTTGCaacactttctctttctttcgcTCGGTCTGGCTTCGTTCTCTGCAGTCCATTGAGTCGAATGTGAGCTCGGTTGTCTGGGCCGAGCCGGGCCGCTAGGGAGCTGCATTCAGAGTGTCTCACTGACACTGGGTGTCTTTGTGTGGCCCAGCCAGAGAAGACCATCCCAACAACAAATAACCGTTAAGAGTCATGGCCTAGCCATCAGCCCAGCCCAGCCCAGGAGAATGTCAATGAGGAGCCAGACAGATCGGACCCCTCTGGGTCCCCCCTCACTGCCAGCCTTCACAAACCTCACAGAATCAGATGAatacaatgttacatttagagggaaggcaaaaaaaaatcagccacACTGAGCTCATGATGGCACTGTGCCCTCTTCAGGCATTGTTCAGTTTCCTCTGGCTCTCTTTGgattgctgtttgtttgtttcagggtTGTAAACCCCACGGGAGAGAGGAAAGAAATAGTGTACTATTCAATTCATTCACCTCTCAGTGAACGTCGTTATCTCTGCTTTCTTCCCGTGAGGCAATGGTAATTTACCAACCGTTACCTGAGTGTCTCCACTAGAGGGCGGTAATGCACTGTTTTTACTTGATGCTCAATGGACCCTTTTCACAGCGTGATGACACAAGACATGAATACTTTTATGATGTTAAAAGCAACAtaagacactgaagactaatggctgctgaaaattcagtttttccataacatattaacataataaactttaatttagcatttttatataaatgcagccttggtcagctttttcaaatcatttacaaaaaaatctttctgaaCCTAAAATTCCAAACAGTAGTGTATAACACTATACTTTGTTATATTTCCAtagcattaaattacaaaagaaataaaaacattgggGTTTCAAATACATCTGAGGGAGTGATGGTAAAACCTTCCTCTTTTAACTGCCATAATCgatcctttttttcttctttaagaaAGTCAAGGAAATACaacatagatttttttgttgtactgTTTAAACAAATggtaatgcaaaaataacatttgctgCGGTctcacatttatttctgtaaaagcCTACCCTGCTATTGTTCATATTCCAAacccaaaaatgtgaaaatggtCCATGAGAGAGTTTGACATGAAATGTTCTATAATCAACAATTCTCCAACACTAAGTATATGTTGGTTTAAAAACAGGCCGTGTTCCAAATGAAAAGTCTGTTGTAGTGATAATAGTTGAGAGGGTTTAAGGGCACAGGGAAAGAGTGTGTTCTTTTGAATGTGGACTGATGAAAGCTCTGAAGCTGAACATTAAAGCAATTAATGAAGTGTATAATTTATAGGTTTTAAGTGCCAATGCATGACTGAGTTAAGAACtctgtgtgtaattatttttacacaatcGTCATTATTGACGCAGCTTTTTAATTGTCACTAAGCTTATCTGCTCGAATTGGAACTGTTGCACCCTCACACAGACTGAGGCCCACCACTAAAAATGTTAGCCCACCCATGCATGCGCTCACCCTGCTTTCCTCTCGCAGGCTTTTCACTCTGTTGCACCATTAGGTGAAACATGCGTGAATACGCTAAGTCTATCTTGGCCTGATAAAGCCTAGAGATGATCGTGAGAGACGTGCAGAAACACAGGCACCCACTTGCTTACTCACACAGCCAGATTTTACAAGGCAATCGCCCGAGATGTGGGCAGCAAAACTCAAGCGAATCATCATTCTCGACCGCATCCCATATAAGTAACATTCGCCGGAATAAACCAAAATCAAGCAGCAAACACAGGTGATGCTTATTGCGAAACCCTGTACACAAGCTCTAAACACCTCCTGGCTTAATTCGCACAAGATTTTGAGGCAGTGAAATGGAGTTAATTTGCTGCGGAGCTCCATAAAATGTGTTCCcggaaaaagaaaataaacaagggTTGTTTCACCGTTTTCCTACGTCGTAATTCTCTCAAGCAAGAAATGGAATCAGCCGTAAAAACTCTGCTAGGGTTTTGTTTGGACAGAAATATACCTAGCTATATTTTAGAGGGCTCTCTACTCTCAATTTTCcaattaaaattctgtctatGAACAGTGAGGACAGTGTGCTCGAGGCTTTCTCATTGTCTgggctgtttttctttctctgctttgtCTTTTAAAGccctgagatttttttttttttttttttttttaagacatccCCCAGCCTCAAACTGCCACAGCTAATGGGCCACCCGACAAAATGtgcaaacacaaagaaagaaatggttTGTTTAGAAATGACATGCTTTCAGTATGCAAAACCTGACATCTGACAAGCACAAACAgagtttgaatttttttgtaaagttgtAGAGAATATATTAGCCAGTACTGAtatcttcatttttatattttttttgtttgttttgtggtaCTGTTTTAGGTTGGTTTATTGAGTTCATGCAAGTGATTTGATTTGCTCTCTGgtgtgtgaattattttttttcaacaatgaCAATGATTATACTGCGACTGTGACCTGAATTTCAGTGTTTGATCCTGGTTTCTGAACTGTGCAAAGCCTTCGGATGGGAGTTGTTTCtcctgaaagaaagagaagaagaaaaaacacttcTGCAAAAGAGCCAAGTGTTCTGTTAACTGTGATGGACTTCTGATTTGTCTCGCACCGGAGGCTGTTTGTGTAACTGGGTCCATTGTCATTAAATGACAAGTCGTGTCCCCTTCAGTGTACATAATGATTTCAGtgcttaaatgtaatttaagtgAACTATCTGCATGAACACAGCCTCGGTCTGGAGTCCACAGAGGTAGTGTGTACTTCAACACGACATGCTACTGTGTACCCTAATATTGTCCACCAATCAGACGGTCACATGCATGCTTTCCAGATCAACAGCACaactgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctctcttacaAGATCACAAACACATGGGCAATGGGGTCCAAAAGTCTTACAATACTCTAATTTCTCATGCTTAAATTATGTACTTACTATAATActaaagatttaattaaaaattgacAATGTCTTCGCATACAGTCTGTCCTTCTCTTGCTTTAACATCAACACTCAAGATGCACGTAGAGTAGTTTGTGTAAAATCTGATGCTCATGTTCTTCAGCATGATTTGAAATGATCCAAAGAACATCTTGTGCTTTAGTGGAAGTAAGAGCATGtgataaatgtcacattttcttatttgtttagTGACCCGGAAATTGTCGAAAATTTTGTAATAAAGGTTATTTTCTTAGAAGTTGCTCAAAAATCCTGAAGCTTTATTTTCGGGGTTTCAATGGTATTTTAAATCCCACATTTTTAGAGTCTTCTCAGACTTTTGGATCCCACTGtactttaacacacacatacacacgcaaacatttttgcatttgggAAACTCATTGTCCTCAGTTCTGGCTGTCACTGAGCATGGAGACTGCTCTGTTATCATTTCCTGTTCTAATAAACCATCAAGAACCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92265 lncRNA downstream 293297 9082795 ~ 9085194 (-) True G62293
TU92203 lncRNA downstream 339791 9030865 ~ 9038700 (-) True G62250
TU92206 lncRNA downstream 340027 9030865 ~ 9038464 (-) False G62250
TU92223 lncRNA downstream 371386 9006834 ~ 9007105 (-) True G62263
TU92222 lncRNA downstream 371712 9006555 ~ 9006779 (-) True G62262
TU92557 lncRNA upstream 35958 9526627 ~ 9526966 (-) True G62525
TU92615 lncRNA upstream 212290 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 212707 9703376 ~ 9703598 (-) True G62565
TU92617 lncRNA upstream 217104 9707773 ~ 9708194 (-) False fam78bb
TU92618 lncRNA upstream 218304 9708973 ~ 9709221 (-) True G62567
XM_043246757.1 mRNA downstream 11704 9353668 ~ 9366787 (-) True rorca
XM_043246925.1 mRNA downstream 25937 9335682 ~ 9352554 (-) False sh3gl1b
XM_043246923.1 mRNA downstream 25937 9335682 ~ 9352554 (-) True sh3gl1b
XM_043246924.1 mRNA downstream 25939 9335682 ~ 9352552 (-) False sh3gl1b
XM_043247590.1 mRNA downstream 49303 9321262 ~ 9329188 (-) True stap2b
XM_043247299.1 mRNA upstream 13343 9504012 ~ 9511635 (-) True abhd17ab
XM_043247431.1 mRNA upstream 23282 9513951 ~ 9520753 (-) True zgc:77486
XM_043247902.1 mRNA upstream 31052 9521721 ~ 9526061 (-) False plin3
XM_043247901.1 mRNA upstream 31052 9521721 ~ 9526061 (-) True plin3
XM_043246992.1 mRNA upstream 38297 9528966 ~ 9552304 (-) True rgl1
XR_006251623.1 other downstream 115665 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 721205 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 728526 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 728526 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 948717 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 464081 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 471128 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 898514 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 950095 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 1049550 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile