RNA id: XM_043246899.1


Basic Information

Item Value
RNA id XM_043246899.1
length 1999
RNA type mRNA
GC content 0.43
exon number 5
gene id st6galnac5b
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8922693 ~ 8934751 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAGCTTCAGTATGAGGGTGCGCGCGAGCAGAAGTGCTGGCTGGAAGATGTGAAGTGTGGATTTGTAAAGCTGCTGTCGGTGAGGCTGAAGAACACGCCTGGACTGAACGGACAGAATTAAACACTTCACAATATGAAGACGCGAACGCGTCATGGGATCATATTGATTGGTGTTGTAAGCGTGCTTACAAGCTTATTGTTCCTGTACAACAGCAGTTTTACTGACGCACCAGAAGATCAGATGAAGTCAGATGGACATCAGATGGACGTTCTACAGCAGAAACCATCCCATTTAAAAGGTTACAGCAGCATCATTGATCATAAGCCTCTTAGGATGCATTGCAAAAGCTGTGCTTTAGTGACCAGCTCTGGTCACATGACCGGAAGTGGCCGAGGTGCAGAGATTGACCACAAGGAGTGCGTCATCCGTATGAATGATGCCCCGACACAAGGCTACCAGAGGGATGTGGGCCAGCGAACGAGTCTGCGCGTGGTGGCACACTCCAGCATGCAGCGTGTGCTACGAAACCGCCTTGAGCTGCTCAACTCCAGCCAGAACACCTGCTTTATCTTCTGGGGGCCTGGAAACTACATGCGCCAAGACGGGAAAGGCCTCGTCTACAACAACCTGCGTCTGCTGAAGCAGATGATGCCCAAGCTACAGGTGTACATCATCTCCAGGTTAAAGATGCTGCATTTTGACGAGCTCTTTAAGAAGGAAACGGGGAAAGATAGAAAAAGGTCCAATTCCTGGCTGAGCACAGGCTGGTTCACTATGGCGATCGCTATGGAGATGTGTGACAGAATCAACGTCTATGGCATGATTCCTCCCGAGTTCTGCAGGTCGTCCAACCTCGAGCCATCCGTGCCGTATCACTACTATGAGCCTGCGGGGCCAgatgaatgtaaaatgtatctCTCCCACGAGCAGGGACGGCACGGCAGCCACCATCGCTTCATCACAGAGAAACGCGTCTTTGCCAACTGGGCACGATTGTTCAACATACACTTTTATCAACCGGAGTGGAGACCGGCACCTGTCACAAAAAACGGCACAAACACCGGGGTGTTTCACAGACTCAGAACCTCTGTGTTCTTTTGAGGACAAACCTTGAACGTTCGAACTGCAAACGCATTATGAATAAAGGTTTTCGACGATTGTGGATTAAAAGAGCAAGGTCCAACTTTGCTGAAGATTTTAATCGCGAAAGCGCTGAAGACCAGCGTTACAAAGATTATGTAAAATGTGACGAGaacaaacagtgttttattCACATTACTTATTAATTGTAACAGTGCGGTCCACGTTGGTTTGTAATTTAGAAAACTGGGTTACTGTATAATTATATCACATTTTCTGTTTCCAGAAATGACTAGTTTGATATCTAGGACATATTGTTCTCTGTgtgtaatttcatttaaattatacataggGCCTCAATAATTTGTGCCGCGTGGAGAGTGTCAAGCAcataatgttaacattttttttcactcagTGGCATCCAAAGAGAGCCGTTTACAAATTGGGCTTTTTCCAAATGACACTTTTATCATAGGGCCTCATTGGATTTGTCAGATTTCGTTTTTTGTACAGAGATATTTAAATAAGATATTCATTTCTTAATACAAATCTGTAAATACAGCTTTATGCTAATACTATAATGTTATCAGTAGTTCTAGTCTTTTCTCTAAATCAGATTCccagaacaacttttttttggttcataTTTCTacatacatttcatatttcctGACGCATTGACATTAACTATCTTAATCGAGTCATATGCTGACACAAGCTGCTccgattaaaaatattataaatgaccCGTGTTTGCCGCTGTTTTGAAATACtgtattaatttaaagaatCAACTGTGAAGATTCATTTCTTCATTAATGAGGTTTTGATGCATGTTTGAGACCACCGCAACAGTCCGAGAGTTATATACGATCACACCAGTTTGCTCATCAAGCaacataaccttttttttt

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92191 lncRNA downstream 997 8921481 ~ 8921696 (-) True G62241
TU92177 lncRNA downstream 1789 8918758 ~ 8920904 (-) True G62235
TU92189 lncRNA downstream 8689 8913482 ~ 8914004 (-) True G62239
TU92069 lncRNA downstream 182740 8712223 ~ 8739953 (-) False LOC122350893
XR_006251637.1 lncRNA downstream 182762 8712037 ~ 8739931 (-) True LOC122350893
TU92194 lncRNA upstream 1327 8936078 ~ 8942201 (-) False LOC122351086
XR_006251681.1 lncRNA upstream 3567 8938318 ~ 8942255 (-) True LOC122351086
TU92212 lncRNA upstream 33538 8968289 ~ 8972773 (-) True G62255
TU92222 lncRNA upstream 71804 9006555 ~ 9006779 (-) True G62262
TU92223 lncRNA upstream 72083 9006834 ~ 9007105 (-) True G62263
XM_043246733.1 mRNA downstream 10706 8820356 ~ 8911987 (-) True prkcz
XM_043246734.1 mRNA downstream 10711 8820356 ~ 8911982 (-) False prkcz
XM_043246731.1 mRNA downstream 12715 8820356 ~ 8909978 (-) False prkcz
XM_043246737.1 mRNA downstream 24657 8820356 ~ 8898036 (-) False prkcz
XM_043246736.1 mRNA downstream 41456 8820356 ~ 8881237 (-) False prkcz
XM_043247484.1 mRNA upstream 38042 8972793 ~ 8975940 (-) True LOC122350776
XM_043247006.1 mRNA upstream 56592 8991343 ~ 9001962 (-) True tnni3k
XM_043247015.1 mRNA upstream 67470 9002221 ~ 9006003 (-) True fpgt
XM_043247013.1 mRNA upstream 74975 9009726 ~ 9018000 (-) False acot11b
XM_043247011.1 mRNA upstream 74975 9009726 ~ 9018000 (-) False acot11b
XR_006251592.1 other downstream 265407 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 272728 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 272728 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 492919 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 493149 8429474 ~ 8429544 (-) True LOC122351131
XR_006251623.1 other upstream 323201 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 1019999 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 1027046 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1454432 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1506013 10440764 ~ 10478685 (-) False G62826

Expression Profile