RNA id: XM_043246907.1


Basic Information

Item Value
RNA id XM_043246907.1
length 4075
RNA type mRNA
GC content 0.50
exon number 18
gene id rfx2
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9900496 ~ 9933011 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCTTGACGTATGAGGAGGACGGTAGCAACAGTTGCCTCGAGACCCCCGCTCGCCATAGTGACTGTAGTCGTGGAGACAGTTACTTACCAACGGGAGCAACActcagcaacagcagcagcagcagcaactggaggagagagagagggaaaagaaCAGTAAAGCCAGGGCAGATCTAAGCAGAAGGCTGAGGAGAAACCATGCAGCGGTCAGAGGGCGGCTCAGAGTCGGCGTCCACTGTGGCGCTGAGAACCTCCACTTCGGCCCAGGCGCCGGTGGTTCAGCCCGTTCCCGCCTCGCAACAGCGTGTGTTAGTTCAGGCCACCGGCTCTTCCCAGAAGGGAGCTCAGGTGCAGCAGTTGCCAGTGCCTAGAGTGCAACAGGTCCCTcagcaggtcCAGCAGGTTCAGCATGTGTACCAGTCCCAGGTGCAGTATGTGGAGGGAGCAGAAGCAGTCTACCCCAATGGCACAATtcgaACTGCATACTCGTACAACCCAGAGTCCCAGCTGTACGGACAGGGCAGCGGAAGCACCTATTTTGACACTCAAGCAGGTGGTACTCAGGTTACCACCGTCGTCTCCTCTGCTGGCGGAGTGCCTGCCCACAGCATGGTGGGAATTGCCATGGACGTGGGCAGCAGTCAGATCATTTCCAGCGGCAGCGCCTACTTGATCCACGGAGGGATGGAGAGCGGCCGCCACCATACCTCTCACTCCTCGCGCTCCTCATCCGCAATGCTTGAAGTGGCGATTGAAAACCTCCAAAAGTCAGAAGGGATTGCCACTCACAAAAGCAGCCTGCTCAACAGCCATttgCAGTGGCTGTTGGACAATTATGAAACGGCTGAGGGTGTGAGTTTGCCGCGGAGCTCTCTTTATAACCACTATCTCAGACACTGTCAGGAGCAAAAACTGGATCCGGTTAATGCAGCCTCCTTTGGCAAACTCATCCGATCTGTCTTCATGGGCCTTCGCACACGCCGACTTGGCACAAGgggGAACTCAAAATACCATTATTACGGTATTCGTCTCAAGCCTGACTCGCCTCTCAACCGCTTGCAGGAGGACACACAGTACATGGCAATGAGACAACAACCTGTCCATCAGAAACAGAGGTTTAAGCCCTTTCACAAGATGGATGGGATGGGGGACAGTCTGAACAGCGGCTCCCAGCACTCGTCCAGCACCCCTGAGCAGAGTGTGGCGGCACAAAGCCAGCATCACCAGCAGTATATTGATGTGTCTCATGTCCTGCCCCCCTTCCCTTCTCCTGATCTGGGCTCCTGTCCTCTGCCTGAGTCAATCAGCATAAACGATGTGAAAAAACTACAGAGCAACTACAGGATTCACTGTGAGGCGACTCTGGACGTAGTGATGAACTTGCAGTTTCATCTCATAGAGAAGCTATGGCAGACCTTTTGGTATTCAACAGCGCCATCTAGCGACGGAGCCACTACCATTCCTAACAGTGAAGAGGATGTGGAGGACATCAGAGGATTCCCCAGAGAGAAGCTGATCGCTCTGTGTAAATACGAACCAATCAAACAGTGGATGAGGAGCTGCGATCACATCCTGTATCAGGCACTGGTGGAGATCCTCATCCCTGATGTGCTGCGGCCTGTGCCCAGCACCCTTACTCAAGCTATCAGAAACTTCGCCAAGAGTCTGGAAGGGTGGCTGACCTCAGCCATGAGTGACTACCCACAGGAGATTGTCCGCACTAAGGCAGCAGTAGTGAGTGCGTTTGCGCAGACCCTGCGCCGCTACACCTCTCTGAATCACCTGGCCCAGGCAGCACGAGCCGTCCTGCAGAACACGTCCCAGATCAACCAGATGCTCAGCGACCTCAACAGAGTGGACTTCGCTAACGTGCAGGAGCAGGCGTCCTGGGTGTGCCAGTGTGACGAGAGCGTGGTCCAGCGTTTGGAGCAGGACTTTAAGGTGACCCTGCAGCAGCAGAGCTCCCTGGATCAGTGGGCCGCTTGGCTAGATAACGTGGTTAACCAAGTGCTCAAACCGTATGAGGGCAGCAGCAGCTTCCCCCGCGCCGCACGCCAGTTCCTGCTCAAGTGGTCCTTCTACAGCTCCATGGTGATCAGAGACCTGACTCTGCGCTCGGCCGCCAGCTTCGGCTCCTTCCACCTCATCCGTCTGCTCTACGATGAATACATGTTCTATTTGGTGGAACACCGCGTCGCCATGGCAACCGGAGAGACGCCCATCGCTGTCATGGGGGAGTTCAGTGACCTCAGTTCCATGATGCCTTCACTCATGGAGAAAGATGCCTCGTTCTCAGACGATCTGGCCAGTGACGGAGACATGTCGAGGATGAGCGAAAGAAGCCTGAGCGAGCCGGCGGTGAAGAGAGAGCGAATCGAGATCAGTCCCTCCCTGCAGGAGATCTAAGAGCAGGACCAAGATAACACTTATCTGTGAGGTTTTTCTGTATCTTGAGGGTGCGGAGGTGTGTTTagggtcagtgtgtgtgtgtgtgtgtgcgtgtgcgtgcgtctCCCTCTCGCCTTTAGGTTTTCTGCGACTGTGAAACAAGAACGTGCTGGTtttgtgatgtgtttgtttttcatgtgcCATAGTCTTCTTTCAGTGCCTTAGATGAGAAAAGAAACACTAGAGCAGAACTGTCTTTCTCTTTGATTTTTCTCTCGTTCTGTCGTTCCCCCGGCCGTGCCTCTAACCGCAGAATGAATGTATCGTCTCAGAACCTCAGATGTCTAAAGCACCTTTTAAAGATGGTCACATTTTAGACTTTCTGCCTCGGCCGTCTCCTCGCGGTTCCTCAGGCGTAGATGCAACCTGCTGACCCCAAAGCTGCCCACTCGTCGACCCCAACCTGCTGCACATGCAAAGCCTTTTCAATGCCGTTTTGTAGAAAAAACCCCGGCCATATGAGATGCCTAGTCTATACCTCAACAGTTTTTAGTTCTAACGAATTAATGtctaacttttataaaaaaaaaaaatcactataaGAGATTATTCGACTCTGTTTGTTGCCCAGAGAGAGCGGCCCGCTCTCGTTCGAAAGCTTCGGGATGTACATACGCCTACTGTATTGATGGAGATTGATCTGTTTCAGATGAACCCGAGCAGAGCGGCTCCCATCAAAACTGGTTTGTGAAACTTTTTGCTCTAGTTTTGTAGTTACTTGACGAGTTCTTAGTCGTTTGCGGTGGTTAAAAAGAGCCTAGTGGACTTGATATGTTGAACGTAcctgtgtgtgagcgtgcgtcTGTACACAAGGACTTCTGAAGTAACTGGAAGTGAGTGTGTACTCAACAGGTTATGTGaatagtgtcattttttttaattaaaaacgaacacacaagccttttttttttatttttaaataacgaTTAAAAGAACTTCCTTTGCATATTTAAGTAGATATCGTGTAAatgttattgcaaaaaaaagtaaaagctaCATAATAGCCGAAAGCTTTTTCTAGAAGATGTAGAAAACCCAAACTAGACAGGTCCGGTAACAGAATATGCAGATTCTTACAGATACGCCTCATCACCTGGTGCTGTACATCTGATGTTTTAGTTTTCACGCTTGTAACGGAAATAAAGCTGGAAATATTTTCAGGATCTGTTTGTAAATGTTGTGCTGAACCCGGTGGGGATCTTTACTGGTGCCTGGTAGCGGCCCGTGACGGGCACCCTACATGTCCCTCTCTGctatttacaaagaaaaacttCATTTCTACTAGCTTTGTGTTTGTTCTGAGAAGTGATTGGCGGATGTTTTCTCACTGTGGTTGGTTGTGAGTGTCAGGCTCTGTACTTTAACGCCTGTCATGGTTCTTTGCCTGTTGTGTGCTTTCGGAAAGGGAATttgctcttttttctttctttttttttttttttctccaatgcTGTTTTAAAGCTTCTTGCTATGGATTATTTTTATGGAGGTAAATGCAATTCTTCTCACTACTATATTGATACCTTATTtttgtgtctttaaaaaaaaaaatctttatttagcCTCAACCGCTTAGTTCGACTGTATTTTGTACTggtaaaaagtgtaataaatttGTGTAAACCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09173 RFX1_2_3; regulatory factor X 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92632 lncRNA downstream 168342 9731906 ~ 9732154 (-) True G62576
TU92619 lncRNA downstream 189500 9710646 ~ 9710996 (-) True G62568
TU92618 lncRNA downstream 191275 9708973 ~ 9709221 (-) True G62567
TU92617 lncRNA downstream 192302 9707773 ~ 9708194 (-) False fam78bb
TU92616 lncRNA downstream 196898 9703376 ~ 9703598 (-) True G62565
TU92749 lncRNA upstream 62556 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 110177 10043188 ~ 10043398 (-) True G62670
TU92889 lncRNA upstream 122040 10055051 ~ 10057928 (-) True G62749
TU92911 lncRNA upstream 144406 10077417 ~ 10077652 (-) True G62768
XR_006251619.1 lncRNA upstream 194874 10127885 ~ 10150991 (-) False LOC122350767
XM_043247781.1 mRNA downstream 43890 9852232 ~ 9856606 (-) True lpxn
XM_043246021.1 mRNA downstream 63046 9786253 ~ 9837450 (-) True trabd2b
XM_043246038.1 mRNA upstream 21670 9954681 ~ 9969460 (-) False mllt1a
XM_043246037.1 mRNA upstream 21670 9954681 ~ 9969460 (-) True mllt1a
XM_043246366.1 mRNA upstream 37117 9970128 ~ 9976762 (-) True acer1
XM_043247334.1 mRNA upstream 46625 9979636 ~ 9995108 (-) True myo1f
XM_043247333.1 mRNA upstream 46625 9979636 ~ 9994898 (-) False myo1f
XR_006251623.1 other downstream 637670 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1243210 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1250531 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 1250531 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1470722 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 21739 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 28786 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 456172 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 507753 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 607208 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile