RNA id: XM_043246925.1


Basic Information

Item Value
RNA id XM_043246925.1
length 3422
RNA type mRNA
GC content 0.41
exon number 9
gene id sh3gl1b
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9335682 ~ 9352554 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTGCTTGCGTTGCGCAGGAAACCGCTAGTTTCTCAAGACTTACAAATGTGGTGGATGCACTGTAAACCTCGCTGAAGGCACAATTTAGTAGAAATCCACCAGTAGAACATTTTTGTAGCATAGCTTTATAAAACCCTTCCCAGCACCCACCtggagtattttttttgtggagCGGGTGTCGTTTATCGTTTATCTGAGGACTTGAGTTTTAGATTTCACTCAGCGACCGTTGACTTTTGTCACACTGTTGTGTCAGTATAAAAACCTGCTTTACAAGTATTTTTTTGGTCGAGAAAAGAGGATTACGCTCTGAAGATGTCCGTGGCGGGCTTAAAGAAGCAGTTTTACAAAGCCAGCCAGATGGTGAGTGAGAAGGTTGGTGGTGCTGAGGGAACTAAATTGGACGAGGAGTTCAAGGACCTGGAGAGAAAAGTAGATGTGACAAATAAAGCTGTAATAGAAGTCATCTCTAAAACATCAGAATACCTGCAGCCTAATCCAGCATCTCGTGCAAAGCTCTCTATGTTGAACACCATGTCTAAGATTAGAGGGCAGGTGAAGAGTCCAGGTTATCCACAGGCAGAGGGCCTGATGGGAGAATGCATGGCAAAGTATGGCAGAGAACTCGGAGAGGACACAAACTTTGGTGGTGCACTAGTTGATGTTGGTGAAAGTATGAAGAGGCTAGCAGAGGTGAAGGATTCTTTGGACATTGATGTAAAACAGAATTTCATCGACCCTTTACAAGGCCTAGCTGACAAGGACCTCAGAGAAATTCAGCACCATTTGAAAAAGCTTGAAGGACGCAGGCTGGATTATGACTATAAGAAGAAACGTCAAGGAAAAATTCCAGATGAAGAGGTCAGGCAGGCTCTGGAGAAGTTCCATGAGTCTAAGGAAGTGGCTGAGATCAGCATGTACAACCTTCTGGAAACTGATATCGAGCAGGTGAGCCAGCTGTCGTCACTGGTTGAGTCTCAACTGCAGTACCACAGACAGGCTGTTCAGATCCTGGATGAACTTTCTGACAAACTCAGAGacagGATGAAAGACGCTCAGTCACGTCCTCGTAAAGAGTACGTGCCCAAGCCCAAGCCTGTAATTGACTTTGGAGACACCAACGAACAGTCAAACGGTGGCTTCACCCCCACATCTGCTCCACCCATGCGCAATGCAGCGGAGCAGCCATGCTGTAAAGCTCTCTATGACTTCGAGCCAGAGAATGAAGGCGAATTGGGCTTCCACGAGGGTGACATCATCACTCTGACCAATCAGATCGATGAAAACTGGTATGAAGGCATGTTGCGCGGCCAATCTGGATTCTTCCCTCTCAACTACGTGGAGGTGGTTGTTCCTCTGCCACACTAAGAGAGTCTTCGTTGAGGaaaagagggggagagagagaaagagaaataataaaaaaaagtgaaagggAGAAAGCTGGAGGGAAGTGAGGTAGGGAGAAAGGAGCCAGTGGAAGTCATCTTGGTCTTCATCCTCACCACATTGTTGCCGTTGATCCAAATGTACCTGTACTCTGGCACTTTTACACATTGATTTATCTCTTTGAAGGAGGGAACTTTGGGAAATGATGACCTTTCACATTCCaggactgactgactgacaggTCGACTGACGTATGGACGTTATAACCTGGTTTTAAGCTAACATTTCAAACACACTAACTCGCTTCATTGTCCAATTCTTTTCATAGTGTCTCAAAActgttttaactgaaattaCTACAGACTATGATATCCCTGTGGTGAAatgatcatgtttttaaaagagtaGACAGGCTGTTGTTAATCAGTACAAATCCTCAATTGTTGGATTGTGAGAAGTTGCATTTTTGACTCGACTGGTCCCCTTACTGCCCCTGCTGGTCAGGCTGCGACATTGACCCTTCTCAGATTAAGGAGAAACTGCCTTGCATCCGTGACGAACACGTAAGCACTGTGGGGCTGTGCGTGCAATGTCCCAGTGTGCAGCAATCCTGAGCCACAGACCTGTTGAAAGGAAATAGTCCTTTTGTACGCTCcataattgtaacatttttctatAGCTATTTGTCatctaatattttttcatgtatattttttacaagATAATAGAAATTAAACGCTGAATTGCACCTTGGATTGTCAAAAAGGTGAGCTAAAACACCTAAGGGATGTGTTTAGTCATGTAGAGAGGGTTTTTACTGCACTACGACCGTTTTAAAAAACTTTGTGCCCCCCTTACAACTTTTAATTCACTAAGGGCGGCAgacaaaacatttacacactGTTTTCTGAAGGAAACACAGCCAAATAGTTCTTCTTCCGGCAGCCTGAATAATagtcttcctctctctctttctcctcttttgATGTCAGTTTACGGTAGTCTCTACATCTGATGCTGCTGGCAGTGTCCCATTATTTCAGGTGTGTATATGTGGGCGTGTTTAGGGTGGATATTGGCTCATAAACCCCATATTAAAGTCTAACTAACACagaatgttttgattttatatatatatatatatatatatatatatatatatatatatataaattcttcCCATTTTCAGAAATGAAGGGATGGTGCTACATCTCTCCCATCACttgcaatgtatttttagagCTTTAAAAGTGCTTGAAGATCTAGTTTCTTCATtactctgtgtttttttttttttcccaaatactGTTTTGTCACACTCCATAAAAGCATGGACCTACACACCATCCACCCTGACTCCCCAAGTCCTGTCTGCATAAAGCACCTACGTGTCCTTTTCCTCTCAGCATCTGTTTACATGTTTTGTCCGTGGTTTGTTTTGCTCACTGTAACAGACTGTAGTAGATGTGCTGAAGCAGACAGGCTATGATCACCGtttcaatgtgaaaaaaaaaagagttgtaGTGCCTTTTTGATGGCAAGAATGGATCTAGAACaccaaacaaaatattaattatgatttttgagCTAATATGTAGTTTCAGTCtgtcctttttctttatttacgaAGGGCTTGTTGGTTTCAGTATTTGGCATGAGCTGTGACCAGATGTACAAGCATGTGTACAGATGTGCCTTTGCAACACTACAAGTTTAAGAAAGCAACAAATGGGTTATTTCTGTCTAATCGAATGAGGGTaccagaattatttttattaaaaaaaaaataaaaaaattctggcACTGCTCcaagtattatattatttttttttatatgcatacaaAACCATTCaaccttttttattaatgatttttgcatGTTAGCTTAATAGCAGGCTCATGTAGTTTTAAAGTCTCCTCTTATATGTTTCAGATTTAACTgcattatattgttattcttaaATATCCCAAACCCTAAATATTTGTATCTTATTGTGTCCACTTgtctttaagtaaataaattcaaGAAAGTA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92265 lncRNA downstream 250488 9082795 ~ 9085194 (-) True G62293
TU92203 lncRNA downstream 296982 9030865 ~ 9038700 (-) True G62250
TU92206 lncRNA downstream 297218 9030865 ~ 9038464 (-) False G62250
TU92223 lncRNA downstream 328577 9006834 ~ 9007105 (-) True G62263
TU92222 lncRNA downstream 328903 9006555 ~ 9006779 (-) True G62262
TU92550 lncRNA upstream 55860 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA upstream 55860 9408414 ~ 9414439 (-) False G62519
TU92557 lncRNA upstream 174073 9526627 ~ 9526966 (-) True G62525
TU92615 lncRNA upstream 350405 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 350822 9703376 ~ 9703598 (-) True G62565
XM_043247590.1 mRNA downstream 6494 9321262 ~ 9329188 (-) True stap2b
XM_043246885.1 mRNA downstream 30341 9300474 ~ 9305341 (-) True cpox
XM_043247610.1 mRNA downstream 43546 9284843 ~ 9292136 (-) True tmem47
XM_043247546.1 mRNA downstream 63106 9263622 ~ 9272576 (-) False nexn
XM_043246757.1 mRNA upstream 1114 9353668 ~ 9366787 (-) True rorca
XM_043246890.1 mRNA upstream 25937 9378491 ~ 9490669 (-) False sema6bb
XM_043246892.1 mRNA upstream 25937 9378491 ~ 9490668 (-) True sema6bb
XM_043246894.1 mRNA upstream 25937 9378491 ~ 9490667 (-) False sema6bb
XM_043246891.1 mRNA upstream 25937 9378491 ~ 9490667 (-) False sema6bb
XR_006251623.1 other downstream 72856 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 678396 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 685717 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 685717 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 905908 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 602196 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 609243 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 1036629 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 1088210 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 1187665 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile