RNA id: XM_043246948.1


Basic Information

Item Value
RNA id XM_043246948.1
length 2235
RNA type mRNA
GC content 0.41
exon number 8
gene id si:dkeyp-82a1.6
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10280303 ~ 10284362 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTACACTGAAGTCGCTCCGACGAAGAACATCATTAATGTTCAGTTTTTCCGGTTTCGGCTGCACAGGAAAAGTAAAAACTTTGATAAGAAGtggtgaaatataaaaaaatggacTCAGGCGATTCTAAAAAAGATGGACCTACAACTAGGAGTAGAAGCTCCAGACAGGCACCCACGCAAGCTTTATCTATAAAGCAACTAAAAAGATACCCAATAAAAAGAACACTGAAAATGAGGGAAGATGAGGGGGCTTCCAGAGCAGTCAATGGATCCAAGGAGTCCAAAAGTCTCACTAAGGAGGATGAGGATGAATCCCCTGTTAAGAAGCAAAAGCTTAAAGGGAAGAGAAGCGGTATAGATGAGAAAGGTGATGGTTTAAACCGAACAGATGACGCAGATATGGACACGGGTGAGAATGAAGACGAGGACGAAGCAATGAGCTCAGATGAGGGGGGCGAGTTGGACCAGGAGTCTAGCTTGACAGCCCGTCCTGGGACAGAAGACACACATCCTGCCCATGTAAGggaacaaaaacatgaatatgagGAGGTTCTTAACAGACAAAATCCTGTTCATCTAAATATTAAGGTCACTGAGATACCCAAACCCAAAGCAGGAATGCACAAGCCAGTCACAAAATATGAAGATGACTATAGTACGGGTGCTCCAGTGGAATATCAGAAAAGAGATTTTAGAAAAAGGATTAACATGAACAATCAGAATCCTATAACagagaaatataaatATCCTCCTGGTTTCGGGGGTCAGAATACATACTTAAAATCTAAACCCCAGAAGAGTTATGTCTACCCTATCATATATCAAACCAACCACAAAAACAAAGaactgaCAAGTTTGCAGCAACGAGTCGCCTTAAAAGCAAGTccagcctcctcctcctctagAGgcTGGACGTGGTACATGTGCAAGCTTCTTCTGTGGTGTGTGATATTATTGCTGGTTTTGGGTGTTTGCGGCTTTTTGGCCTATAAGAAGTTCTCGCTCTCCCATTTGTCTCAAACTGATGTGGTCCATTCTAAATCACTGGAGAAATTTGATCCAGAGTTATCAGCTCTGCGGATTCTTTTTCCAAGCCAGCGCCCTGTGTTCTGGCATAGGAGCGGGAAACATATTAAGCGCCACCTGGAGATGGTCAACCCCACTGAACCGGTCAGCGTAATTCTGACTGCTGGCCTTCAGGCTGAAAGGACATTGGGCTGTCTTGCACGAAGCTTAGCTGCAGAGTACTCTGCTACCCATAACGCTTCCATCTTAGAAATCAACGGGACCACAAAAAGAGCACAAGACAGTGACCGGGTCAAGCTGGATATAGATGAAGAGCTGAGGAAAGCATTTGAAGGTGATAAACCTGCGGCTGTCGTGCACCATTTCGAGGAGCTCCCTCCTGGATCTACGCTCATATTCTATCGTTACTGTGACCACGAAAATGCAGCTTACAAGAAGGTTTTTCTGGTTTTCACCGTGATGCTTTCGGTGAAGGAAATATCCCAGACGACCAGTCTAAGTGCCGTGGAAGACATGGTGCACGACCATATAAAACAGAAGTTTATCGTCTCAGACAAATCTACTATGTTTAATCAAATGGATGTGGATAAACTGAGTGGACTGTGGAGCAGAATTTCTCACCTCATTTTGCCGGTGGCTGCAGAAGAGAAGATTGAACAGCAGGGATGTGGGGTATAACCTCACGGAAAATCATCAGATTTTATTACTGTAGAGTTTTGAGACTAACTGGTCTAGTTCATGGACGTGCGGACcactaaaatgtacataaagaatcttttttccaaagagttttaaaaaaaaaaaaaaaagtgtttgtttataaatgtttttataaaaatgttttttgtatttgcctaaatatgtgtgtgtgaaggcagACACTTgctcatataataataattatgcatttggCATTTTATAGTAAGCGTGTTGCTTACAAtataaatcaacaaattaatTGTTGTACATAACCTTCTCAAGGCCATGTGTGGTAATGATTAAAGTTTTGCACTGATTTTTGAATTTATACTCTGAATTGCAATCAAAATTTTGTTTGGGTTTGATGTTATATATTTCCTTGACTAAGATTACAAGTCAGCTTGAGTTTATTTCTATTCTGGTTAATGCATTTTCGGTTCCTGGTTTATCGTTCAAggcattgtaaaaatatattttatgcaattaaaaaaaatgctcatttgacttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92949 lncRNA downstream 15542 10263818 ~ 10264761 (-) True G62800
TU92943 lncRNA downstream 27047 10250633 ~ 10253256 (-) True G62795
TU92944 lncRNA downstream 28068 10250633 ~ 10252235 (-) False G62795
TU92941 lncRNA downstream 32182 10245196 ~ 10248121 (-) True smim24
TU92937 lncRNA downstream 123110 10156975 ~ 10157193 (-) True G62789
TU92955 lncRNA upstream 17300 10301662 ~ 10301885 (-) True G62805
TU92967 lncRNA upstream 41379 10325741 ~ 10327208 (-) True G62817
TU92973 lncRNA upstream 85971 10370333 ~ 10373331 (-) True G62821
TU92977 lncRNA upstream 97355 10381717 ~ 10443630 (-) False G62824
TU92982 lncRNA upstream 97355 10381717 ~ 10443630 (-) True G62824
XM_043247660.1 mRNA downstream 8306 10264841 ~ 10271997 (-) True haus5
XM_043246080.1 mRNA downstream 21111 10257145 ~ 10259192 (-) True LOC122349939
XM_043245989.1 mRNA downstream 23353 10253890 ~ 10256950 (-) True dohh
XM_043246026.1 mRNA downstream 32147 10245861 ~ 10248156 (-) False smim24
XM_043247916.1 mRNA downstream 238534 9995547 ~ 10041769 (-) True adamts10
XM_043246950.1 mRNA upstream 130 10284492 ~ 10291110 (-) False zgc:112962
XM_043246949.1 mRNA upstream 130 10284492 ~ 10291110 (-) True zgc:112962
XM_043247622.1 mRNA upstream 7336 10291698 ~ 10297072 (-) True LOC122350862
XM_043246944.1 mRNA upstream 13997 10298359 ~ 10300306 (-) True tmco1
XM_043247452.1 mRNA upstream 32063 10316425 ~ 10320373 (-) True cpt2
TU92747 other downstream 310818 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 318602 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1017477 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1623017 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1630338 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 104821 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 156402 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 255857 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 703084 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 812640 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile