RNA id: XM_043247335.1


Basic Information

Item Value
RNA id XM_043247335.1
length 4014
RNA type mRNA
GC content 0.46
exon number 25
gene id myo1f
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9979636 ~ 9995108 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTGTTTCTTAATAGCTTTCTGAAACCAAACGCTGCATGCTACCTTGCTGACCAGCTTGTGTAGTTTATGTAAAAGTCCATCATTAGTTACTTtccacacttaaaaaaaagttgtttcaacttgaaataacgtGTTAGCCCACtgccagcattttttttgttgagtcaccttgaaattttaagttacttAATATGAATTTAAGAGACAACTGGAATTACAGTGCAAAGGGCCATACCATCACATCTAACGAACTAGAACAAATCAAGCAAGGTTTAGACATGCAAAATTGAAtttataaaatgacaatttctcagtagaactgaaaaaaagaggCAAAATCAGGATATATTGTAGACGCTAAAGTATGTATCTGATTGTCCAAATAGGGGCATCTTAGTGTCACAAGATGAGTCCTGATCCTACTTCCATTTTTTGGGTCTCGGCCAATGAGGCGGGGAAAGCGGAGCAGGAAAAACAGTTGCTGCTAAATACATCATGGGTTACATCTCTAAAGTATCAGGAGGAGGAGCTAAAGTACAGCATGTGAAGGAAATCATCCTGCAGTCAAACCCTTTGCTGGAAGCCTTTGGCAACGCGAAGACAGTCCGCAACAACAATTCAAGTCGATTTGGCAAATATTTTGAGATCCAGTTTAGTCGAGGAGGAGAGCCAGACGGAGGGAAAATCTCCAACTTCCTTCTGGAAAAATCAAGAGTCGTGAGccagaatgaaaatgaaaggaaCTTTCACATCTTCTACCAGCTAATAGATGGTTGCACACCCCAGCAGAGGGAAGAATTGGGAATTATGACCCCagattactattactatttgaACCAGTCTGGAACATACAAGGTGGATGGAACTAATGACAGCAAGGACTTCCAAGAAACCATGGAAGCCATGCAGGTGATTGGTATCCCCGAGATGTTTCAGAGACAGGCGCTGCAGATTGTAGCTGGCATCTTACATCTGGGCGCCATCAGTTTCATTGAGGCAGGAAATTATGCGCAGGTGGAGAGCGTGGACTTACTGGCATTTCCTGCGTATCTGCTGGGCATCGACCAAAATCGTCTACAGGAGAAGCTCACCAGCAGGAAAATGGACTCCAAATGGGGTGGTAAATCTGAAACCATTGATGTGACTCTGAACAGAGAACAAGCCAACTACACGCGTGACGCTCTCTCCAAAGCACTCTATGCTCGTCTGTTTGACTACCTGGTTGAGGCAATAAATAAAGCCATGCAGAAACCCATCGAGGAGCTCAGTGTTGGTGTTCTAGATATTTATGGATTTGAAATTTTCCAGagGAATGGTTTCGAGCAGTTCTGTATCAACTTTGTGAATGAAAAGTTGCAGCAGATCTTTATCGAGCTGACACTGAAAGCAGAACAGGATGAGTACGTACAGGAGGGCATCAAATGGACACCCATAGAATACTTTAACAACAAAATCGTGTGTGACTTAATAGAAAATAAGCTGAATCCTCCTGGGATCATGAGCGTGCTGGATGATGTCTGTGCTACCATGCACGCCAAAGGAGACGGTGCTGATATGACTCTTCTTCAGAAGCTACAGGCTGCGGTGGGGACACACGAGCACTTCAACAACTGGAACTCTGGTTTCGTCATTCACCACTATGCTGGCAAGGTGTCGTATGATATCAGCGGTTTCTGTGAGCGAAACAGAGACGTGCTTTTCCCTGACCTCATAGAACTGATGCAAAGCAGCCAATTTGACTTCATTCGAAGCCTCTTCCCAGAAAACCTCAGCACGGATAAGAAAGGTAGACCAACCACTGCTGGCTCGAAGATCAAAAGACAAGCCAACGAGTTGGTTAGCACACTGATGAAGTGCACGCCGCACTACATCCGCTGCATCAAACCTAACGAGACCAAGAGGCCCAAAGACTGGGAGGAGAGCAGAGTGAAACATCAGGTGGAATATCTGGGCTTAAAGGAAAATATCAGGGTACGACGTGCTGGCTTCGCTTATCGTAGAATCTTCCAGAAGTTTTTACAGAGGTACGCCATTCTAACAGCAGAGACGTGGCCATATTGGCGAGGCGCGGAACAGCAGGGCGTTTTGCACCTTTTGCGCTCTGTTAACATGGACACGGATCAGTACCAAATGGGCCGCACCaaagttttcatcaaaaatccCGAGTCGctaTTTTTGCTGGAGGAGATGCGAGAGAGGAAGTTTGACACATTCGCCAGAACCATCCAGAAGGCGTGGAGGAAATACATCGCCAGGAGGAAATATGAACAGATGCGGGAGGAGGCCTCTGATATACTGTATAACTCTAAAGAACGACGTAGGAATAGTATAAACAGGAACTTTGTCGGCGATTACCTTGGAATGGAAGAGAGACCTGAACTCCGGCAGTTCATGGCCAGGAGGGAGCGAGTCGACTTTGCAGACTCGGTCAACAAGTTTGACCGCAGATTCAAGtctatAAAGAGGGATCTAATACTGACACCAAAATCCATCTACTTAATTGGtcgggaaaaaataaagaaaggacCAGAAAAAGGCCAGATAAAGGAAGTTCTGAAAAGAAAGCTGGACATCGGAAGTGTCCGTTCAATTTCTCTGAGCACAAGGCAAGACGACTTCTTCATCCTTCACGAGAACGAGTACGACAGTCTCCTGGAGTCCACATTTAAGACAGAGTTCCTCAGTCTGCTTTGCAAGCGTTACGAGGAGCAGACCCGAAGCAAACTCTCTCTGTCCTTCAGCGACAGGCTGGAGTTCCGAGTGAAGAAGGAGGGCTGGGGAGGAGGAGGCACACGTATGGTGGTTGTCCAGAGGGGACAGACTGATTTAGCCGTCatcaaacctggaggaaagactCTTTCTGTCTCAATAGGAGATGGACTGCCGAAAACATCCAagCCAACCAGGAAAGGCATGCCACAGAGTCACGGAGGAAGAAACCAGCCACGGCAAAGAGGGGGCCATCAGAATGGGGCAGCACAGTTTGCCCGGGGTGGTGCTCAACAGCACCATCAGCCGCAGCAGCAGAGGGAAGTAATGTACTCTACACCGATGAGGAACCCTCCGCCCAGCAATGCTCTTCCTAAACTGGGATCGCAGAAGAATCGAAGAGGCTCCAGGCCTGCCCAGAATCAGTCCACAAACCTTGACTTCCTCAATGTGCCTGATCAGGGCATGTCAGGAATGCAAAGGAAAAGGAGCATCAGTCAACGGCCTCCTCCGGCCCCCTCTAGCCGCCCCAAACCCCAGCCCCGTCCACAGGGCCCTCGCTGCAGAGCGCTTTACCAGTATTTTGGCCAAGATGTGGATGAAATTAGCTTTGATGTCAATGACATCATAGAACTTATTAATGAAGATCCGTCAGGGTGGTGGCGAGGGCGGATTCATGGGAAGGAGGGTCTCTTTCCTGGGAATTATGTGGAGAAGATCTGACCTGATGACAATGCACCATGACTTTTGACCTCTAACCTCCACTAGATCATGGAATCTCTTAGGCTCGGGGAATTGACCTCATGCATGGTTATTGCATGGTTTTAGATAAGCCAGCTCAGTCGTTTCCGGTCAACTGTAAGAAGAGTTTCTCTACATAATCCATTCACAATTAGaagaaaagttttgtttgtctaaaataatactgtttcaGAAATGACTAAGGCGGATGTTACATTTACTCAAGGTAATTTGTTAATTCATGCCGTGAGTCTTTGCACTGATTGACagtggtaactaaataaatCACCTTCAAGCCAAGTTCTTTTATATTCTTGAATGATGGTATACTGTTTCTGAACATTCGGACAGCCCTGCGCCGCTGGAGGTGGGCTGTAGATTAATCTAAACACGTGTCTGTGATGTTAGCATGTGTTGTTGTATGTTCCTGTagcatttgtttcttttcctctttctatacgtgtaatatatatttataaatactccCTGTAAGCCAAGGAATTTGGGGTACTTTCCTGGGATTATCAGACTCTGCATATAAAATGATGTTCTTTAATAACA

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92632 lncRNA downstream 247482 9731906 ~ 9732154 (-) True G62576
TU92619 lncRNA downstream 268640 9710646 ~ 9710996 (-) True G62568
TU92618 lncRNA downstream 270415 9708973 ~ 9709221 (-) True G62567
TU92617 lncRNA downstream 271442 9707773 ~ 9708194 (-) False fam78bb
TU92616 lncRNA downstream 276038 9703376 ~ 9703598 (-) True G62565
TU92749 lncRNA upstream 6913 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 54534 10043188 ~ 10043398 (-) True G62670
TU92889 lncRNA upstream 66397 10055051 ~ 10057928 (-) True G62749
TU92911 lncRNA upstream 88763 10077417 ~ 10077652 (-) True G62768
XR_006251619.1 lncRNA upstream 139231 10127885 ~ 10150991 (-) False LOC122350767
XM_043246366.1 mRNA downstream 2874 9970128 ~ 9976762 (-) True acer1
XM_043246038.1 mRNA downstream 10176 9954681 ~ 9969460 (-) False mllt1a
XM_043246037.1 mRNA downstream 10176 9954681 ~ 9969460 (-) True mllt1a
XM_043246907.1 mRNA downstream 46625 9900496 ~ 9933011 (-) True rfx2
XM_043247916.1 mRNA upstream 6893 9995547 ~ 10041769 (-) True adamts10
XM_043247917.1 mRNA upstream 6893 9995547 ~ 10029590 (-) False adamts10
XM_043246026.1 mRNA upstream 257207 10245861 ~ 10248156 (-) False smim24
XM_043245989.1 mRNA upstream 265236 10253890 ~ 10256950 (-) True dohh
XM_043246080.1 mRNA upstream 268491 10257145 ~ 10259192 (-) True LOC122349939
TU92747 other downstream 10151 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 17935 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 716810 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1322350 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1329671 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 400529 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 452110 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 551565 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 998792 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 1108348 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile