RNA id: XM_043247434.1


Basic Information

Item Value
RNA id XM_043247434.1
length 4656
RNA type mRNA
GC content 0.48
exon number 21
gene id edem3
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9606505 ~ 9618126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGGCGTAAGACTGGTGATCATCATTTACTCGGCGATTGTGAGAGAGAGACCTCTGGCCCTTTGTATTACACCTGCCGTAAAACCACTGTTAAACGGAATATTTTTTATCTGTCGGAATCGGAGAGCTGAATGGATCTTCTGAACACTCCTGGATGACCGAAGAACAGATTTAAGATGGTCTTTCCGCTAGTTTTAGCAGCGTTTCTGCCTCAATAACATATGTTCAGTACTGCCGAACTGTCATCGGCTGATTAGCCGGCGAGCTAAACAACAAAGCGTGACGAGTTaataaatctttgttttttcatcatatCGTATTGACAACAACATTTAGGGGACTCTATTCCAGAGTAACGCCGCGGCATTTTCTACACGGTTTAAACTAGTTTTAATACCACGAAGATGACACTGGGACACGCATACTGTTCATGTAATTGCTATCAGTTTTAATAGGATCAATACGATgctttctctccttctttcttgGGATATAAACTGCTGATCGTGACTCCCATGGTGATGGTTGCTATTAGAGACGAATCATCTTTTTCCATGGCCCCATCTGGAGCTCCTCTTGAGCCTGTCTCTGCTGGGGATCTACAGTGAtgtagttttgttgttgttttataggTGATGAGTGTAGCATGCAGACGTGTCACATGGATGCCAACGTGTTAACAAGGTGACAGGCAGGTGAGACAACAGCAGCTGGCTGAGTAACACTAACGACAGGACTTTCGTGTGAGGAAAATTTGATGCGACCGTTCTTCCTTCCTCGGTCAGTTTGTAATAGACACTAGAAGCATCTCAGAAATGCACCAGAGCTGCATTCAACCAAGTGAGAAGTTCAGATAAGAATATGAACTGTAAAGTTATTGAGCTAGAACAGTGAATGTATTCAAGTGTTGTGGGCGTTACGAAATTCTCCGCAGTATGTTTTTtgatttaacatttgaaaatgatgGACCGGCGGTGGATGAAGTCTGACTTGGTGCTAAATAAACACATCTAAGATAGGAACAGGTGACTCGAGACGCTTGCCTAAGTTGTCTTCATCTACGTGAAGTCTGTTGTGAAACCAGTGGATCGGAGCCATGTGGATGCTTCATTCTGCAACAATGTTGCCTGCTTTTTTGCTGCTGTTTCTTTTGGGAACCTCCATCAGTTTGTCAGAGGCCATGAGTAGAGATGAGAAGAATAAACTGAGGAACCAAGTGCTGGAAATGTTTGACCACGCTTATCAAAACTACATGGACCATGCCTACCCCGCAGATGAGCTGATGCCTTTGACTTGCCGTGGGAGAGTACGTGGACTAGAGCCCAGTCGAGGGGATATAGATGATGCCCTGGGCAAGTTCTCCCTCACCCTCATCGACACTCTTGACACCCTTGCACTGTTAAATAAGACGGTGGAGTTTGAGGAGGCGGTGAGGAGAGTGGTGGCGGATGTACGGTTGGATAATGACATCGTGGTGTCCGTATTTGAGACCAACATCCGGGTGCTGGGTGGACTACTGGGAGGCCATTCCATGGCTGTCATGTTGAAAGAAAGTGGCCGAATGCTCTGGTACCAGGACGAGCTGCTGCACATGGCCAAAGATCTCGGACTCAGACTGCTGCCTGCATTTAACACCAGCAGTGGCCTGCCTTACCCTAGAGTGAACCTGCGTTATGGAGTCCGTGGACCCGAGACCCGCACAGGCACTGAAACGGACACCTGCACTGCCTGTGCCGGGACAATCATTCTAGAATTTGCAGCCCTGAGCCGCTTTACTGGCGACCCCACATTTGAGGCTCATGCGAGAAGAGCTCTTGACTTCCTTTGGGAAAAGAGACAGAGGAACAGTAATCTAGTGGGAACAACCATCAATATCCACTCGGGAGAGTGGGTCCGCAGGGACAGCGGAGTTGGGGCAGGCATAGATTCCTATTATGAGTACTTAATGAAGGCTTATATATTACTTGGAGATGATCGATTTCTTCAGCGCTTTAACACTCACTATGCATCCATTATGAAATACATCAGCCAACCTCCTCTGCTACTGGATGTCCACATCCACAAACCCCTTCTGCCAGCTCGAACCTGGATGGACTCCTTGCTTGCCTTTTTCCCTGGATTGCAGGTATTAAAGGGGGATATCCGGCCAGCCATAGAGACGCATGAAATGCTTTATCAGGTTACCAAGAAACACAACTTCCTCCCTGAGGCCTTCACGACTGATTTCAGGGTTCACTGGGCTCAGCACCCCCTCCGGCCAGAGTTTGCAGAAAGCACTTACTTCCTCTATAAGGCAACCAGAGATCCATATTACCTGGAGGTGGGCCGCACCATACTGGAGAACCTGAACCGATTCGCTCGGGTTCCCTGTGGCTTTGCTGCTATGAAGGACGTGAGGACAGGGAGCCACGAGGACCGCATGGACTCGTTTTTCCTGGCGGAGATGTTTAAGTACCTGTTCCTGTTGTTTGCTGAGGAGGAGGATTTGCCTTTTAATGTGGAGGACTACGTATTTACCACAGAAGCTCATCTGTTGCCTCTTTCCCTCTCCACCGCTTCAAACTCACAGGCGCCCCCTTTGGTAAACAATATGGCTGGAGAGGAGCTTGATGACTCAAATTTTGAGTGGACTTGCCCTAACACCCGCCTACTCTTTCCTGATCCCGCCTTCCCACGCAATCTCCGCGAACCAATCAGGAGTGCGGTGGATAAGAGTTGTCCGCGCCCAACTACTCATCGAGATCCTGGTATGGGACGTCCTCCTCTTAGGGCTCAAGACTTTATGGCCAATAACCCTGAACATTTGGAGCTGCTGAGGCGGATGGGTGTCAGTCTCATCCATTTGAAGGATGGCAGAGTACAACTTGTTCAACATGCCACACAGGCTGTGAGCGCAGTTGCTGCAGAAGACGGCATGCGCTTTATGCAGGAAATGATGGAGCTGTCCAGCCAGCAGCAGAAGGAGCAGCTTCCTCCACGAGCTGTTCAGATTGTTTCACACCCTTTTTTTGGTAGAGTGGTTTTGACTGCAGGCCCTGCGCAGTTTGGAATGGATCTTTCCAAAAGCAGTTCTGGAGTGCGTGGGTTCGTAACTGTAGCGGAGCCCTATAACGGCTGTTCTGAGTTGAGTAACGGAGAAATTGTGGCCGGCCGCATTGCTCTGCTGCAAAGAGGCCAGTGCATGTTTGCAGAGAAGGCCAGGCACATTCAGAAAGCTGGGGCCATCGGAGGTATCGTTATAGATGACAATGAGGGCAGCAGCAGTGATACAGCTCCATTGTTCCAAATGGCGGGAGATGGGCGGAACACTGATGATGTCACTTTACCACTTCTTTTCCTGTTCCATAAAGAGGGTAACATCCTGTTGGAGGCTCTAAAGGAGTACAGGGAGGTGGAGGTGCTGCTAAGTGATAAAGCTAGAGACAGAGAATCCATATTTAAGGGGAAAGCCCTCCCGGGCGCCCTGTTGGATGGCAGTACGGAAGGAGCAGAGGAAGAGGACTGCTCCACCGAAGAGAAAGACCACACTTCTCCCGCCTCTTCGGAACCTGTCGACCAATCACAAGTAACTACTCAGGAACAGACAACAGGCGACTCGGCCGTGGGACAAGAGTCAGTTCAGCCAACGGAGGAACTTAACAGTTACGTTTCCGTGGATGTAGGGGAGGAGCCTGCGGTGGACGACGACTCGAGCAGCCAATCGGTGGACTCGTTGATGGCTGATTGGCAGGAGGACTTGGAAGCGTTTAAGCAGATGGAGAAGGATGAGCTTTGACATTCCCCTCCATGCCGGACTCCGCTAGGTTGTCCCAGCCATAGCACAGACTGAGAAATCAGTTCTGTCGAATAGGGTCAATATATCAGACGGGGCGTGATTAAGAACTCTTACTCGAAGAGCTCATTTTCGACGGCCAGTTCTCAGGGGCTTTTCTTTCCGATTTGcatcttttctgttttcaacCGAGTCAACCGAACTCTCAAAAACTGTTATTCCAGTTCTCACCCACACATTACCACTTGTCTGTTTCCATACCTGCCTAGGGTGCGCAATCAGCCCTGTTTTTGTCTTCCTTCTAACAAACGGATTCCCTGATTATTGAAGCGCAGGCTTAAATCATCAGTGCAGATGAATCATCTGAAGGACTGATTACTTTAATGGCTGGTTTAACTGTGATGAATTGCTTTTTTTGCAATAGGATTTCGGTTCTCGTCTCAGTTTGCAAGGAAAATACGAAGAactttatgaaattatatatgtgtatgtttgagtgtttgtatgtatgtatgtttattgttCTTGATTAATAAGTGAATCAGCCTGAgagccaaacaaacaaacctccTGCAGatcaaaaaatgctttctccAGCCTTCTGCATTAAGTATTTAACGGTCTTACACATTCAATCCAGCTAATATGACTTTATAACGAGGTCaatgttttcaaagaaaagcattaaaggACCACGGATGACAACTTTGCATGTCAGTGACAGACATTTTTCCGAGGATGAAGGAGACGTGCGAAGCATCCTGAACGATCCGCCAGAGGGCGCCATTGCTCCATTGCCCCCAATAGCTAATTAATTGACTTGGAGACCATGCCAGAGGGCGTGAAACGTGATAAGCTCAATAAAATTGATTGAAAAAATTTCA

Function

GO: NA

KEGG:

id description
K10086 EDEM3; ER degradation enhancer, mannosidase alpha-like 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92557 lncRNA downstream 79539 9526627 ~ 9526966 (-) True G62525
TU92550 lncRNA downstream 192066 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA downstream 192066 9408414 ~ 9414439 (-) False G62519
TU92265 lncRNA downstream 521311 9082795 ~ 9085194 (-) True G62293
TU92206 lncRNA downstream 568041 9030865 ~ 9038464 (-) False G62250
TU92615 lncRNA upstream 84833 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 85250 9703376 ~ 9703598 (-) True G62565
TU92617 lncRNA upstream 89647 9707773 ~ 9708194 (-) False fam78bb
TU92618 lncRNA upstream 90847 9708973 ~ 9709221 (-) True G62567
TU92619 lncRNA upstream 92520 9710646 ~ 9710996 (-) True G62568
XM_043247809.1 mRNA downstream 539 9581828 ~ 9605966 (-) True zgc:92140
XM_043247810.1 mRNA downstream 8142 9581828 ~ 9598363 (-) False zgc:92140
XM_043246179.1 mRNA downstream 26652 9562094 ~ 9579853 (-) False colgalt2b
XM_043246178.1 mRNA downstream 28488 9562094 ~ 9578017 (-) True colgalt2b
XM_043246992.1 mRNA downstream 54201 9528966 ~ 9552304 (-) True rgl1
XM_043247557.1 mRNA upstream 82268 9700394 ~ 9708621 (-) True fam78bb
XM_043246023.1 mRNA upstream 168126 9786252 ~ 9837450 (-) False trabd2b
XM_043246021.1 mRNA upstream 168127 9786253 ~ 9837450 (-) True trabd2b
XM_043246020.1 mRNA upstream 168127 9786253 ~ 9837450 (-) False trabd2b
XM_043246022.1 mRNA upstream 168127 9786253 ~ 9837449 (-) False trabd2b
XR_006251623.1 other downstream 343679 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 949219 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 956540 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 956540 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1176731 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 336624 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 343671 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 771057 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 822638 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 922093 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile