RNA id: XM_043247453.1


Basic Information

Item Value
RNA id XM_043247453.1
length 2471
RNA type mRNA
GC content 0.46
exon number 5
gene id cpt2
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10316425 ~ 10320373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgaaaaagtgcGATCTTTTGTCAGGCGGAAGTAATGAATCAAACATTAAAATCGAAGATTTTGTTGTGAATTTTGTCTGCTTGTTAAGCAACTAGTGAAAGCTATCTTGGGAAATCATTTTTGTTacgtttgttgttgttttttctaaacAGAAAGATTGCCAGTCCCAAAATTGGAAGATACAATACGAAGGTATCTGGCAGCTCAGAAACCCCTGCTGAATGATGAACAGTACAGTAACACAGAGAAAGTAGCAAATGATTTCCAGAGTGGTGTAGGCAAGCAGTTACATGAAGAACTTGTGGCCttagacaaaaacaacaagcaCACCAGCTATATATCAGCTCCATGGTTTGACATGTACTTGTCTGCTCGGGAGTCTGTTGTGCTCAACTTCAACCCCTTCATGTCCTTTAACCCTGACCCCAAACCCGAGTACAACGACCAGCTTGTGCGAGCCACCAACATGGTGTGCTCTGCTGTCCGGTTCATGAAGACCCTTCGCGCTGGTCTACTCGAGCCAGAGGTGTTTCatcttaaccctgccaagagtGACACCGATAGTTTCAAGAGGTTGATCCGATGGGTGCCCCCCTCTATCTCATGGTTTGGAGCCTACATGGTGAACGCATATCCTTTGGATATGTCCCAGTACTTCCGCCTCTTCAATTCCACACGTATACCCAAGTACAAGCGCGATGAGCTCCTCACGGACGACAAGGGCCGCCACCTGCTCGTGGTAAGGCAAGGAAACCTGTATGTGTTTGATGCTCTGGATCGGGACGGCAACCTGATAAAGCCTGCCGAGGTGCAAGCTCATTTGAAATACATCTTATCAGACCCCACACAAGCTCCTTCGTTCCCCTTAGGCATTCTAACCAGTGAGAATAGAGACACCTGGGCAGGGTTAAGACAGAAACTACTGGATGCTGGAAATGGAGAAGCTCTGCATTTAGTAGACAGTGCTTTGTTCTGCCTCTGCCTGGATGAGGAGGTGATGAGAGACCATATTCACATCTCCCACAACATGCTTTACGGGGATGGCTGCAACCGGTGGTACGACAAGTCCTTCAGCATCATCTTGGCTAAAGACGGACAGGCTGCCATCAATTTTGAGCACTCTTGGGGTGACGGCGTGGCTGTTCTTCGCTTTCAGAATGAGGTCTTCAAGGACACCACGGAGAAGCCTTTGGTCGGGCCTGGATCCCAGCCTGCAGCCGTGGACTCTTCCTCTGCAGTGTGCAGATTAGAGTTTAAACTCACCGATGAGTTAAAAGCTGGAATCACAAAAGCAAAAGAGAACTTCCAGGCCTCCGTGTCAAAGCTCACCATCGACGCCATGGAGTTCAAGAAAGGTGGAAAGGAGCAACTTAAGAAGAAGAAGCTCAGTCCGGATGCCATCGCTCAGCTGGCTTTCCAGATGGGCTTCCTACGGCAATACGGCCAGACTGTCGCCACATACGAGTCGTGTAGCACTGCAGCCTTTAAACATGGCCGCACAGAAACCATCCGTCCTGCTACCATCCACACACAGCGTTGTGCCAAGGCATTCGTTGAGCAGCCCGGAAAGCACACTGTGGAACAGTTACAGGGGCTGTTGAGTGAATGCTCCAAATATCATGGGCAGCTCACTAAAGAGGCAGCAATGGGTCAAGGCTTCGATCGTCATCTCTTTGCCATGCGCTACCTGGCTAATTCAAAAGGAACGGCCCTGCACAGTCTCTACAAAGACCCAGCATATGCCGCCATAAACCACAACATTCTCTCCACCAGTACTCTTACCAGCCCTGCGGTCAGTCTGGGCGGATTTGCTCCGGTGGTGCCTGATGGTTTTGGAGTGGGCTATGGTGTCCATGATGAATGGATTGGATGCAACGTGTCCAGCTACCCTGCCAGAAATGTTCATGAATTCCTCAAGTGTGTTCACAAGTCCttggaagacatttttacagtgcTTGATGGAAAACCCATTAATTGAAAGTGCACTTAATGTGAAGTTCAGTGAAGCACTTTGGTAGGTGATATAGTCTGAATATAGAGCatttatgttttacttttattggaTGAGGACTCGAGTTTATCAGTGTAACGTTTTATCATTAAAGGCGCAAGGTAGAAGAAATACGCTTTGAACTGTGACTGCTTGGTATTGAACTCATGCTGAAGTGATTTGTCTAGAAATAAAACTTAGTAATTGTAATGGTTTAGTCTGGGAAATGCTGATGTCCTTACATTTATTGTCCCTTTGAGATTCAACAGGCAGCTTTAATCCACCTATACTTTCAGTGGGTATACTTTTACTCAGTGCAACATGAATACAGTGTACTTCAGTACGCTGCAAATTTCtgcattatgtaaaataattcaaagaCCTGCCCTGTGCcttataaaatgtaagaatgtGGATAACTATGAATactttaattgtaaatattgtaacaaCCTTAATAAAATATTGGATTGAAATGTG

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004095 carnitine O-palmitoyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92955 lncRNA downstream 14540 10301662 ~ 10301885 (-) True G62805
TU92949 lncRNA downstream 51664 10263818 ~ 10264761 (-) True G62800
TU92943 lncRNA downstream 63169 10250633 ~ 10253256 (-) True G62795
TU92944 lncRNA downstream 64190 10250633 ~ 10252235 (-) False G62795
TU92941 lncRNA downstream 68304 10245196 ~ 10248121 (-) True smim24
TU92967 lncRNA upstream 5370 10325741 ~ 10327208 (-) True G62817
TU92973 lncRNA upstream 49962 10370333 ~ 10373331 (-) True G62821
TU92977 lncRNA upstream 61346 10381717 ~ 10443630 (-) False G62824
TU92982 lncRNA upstream 61346 10381717 ~ 10443630 (-) True G62824
TU93013 lncRNA upstream 63349 10383720 ~ 10484599 (-) True G62829
XM_043246944.1 mRNA downstream 16119 10298359 ~ 10300306 (-) True tmco1
XM_043247622.1 mRNA downstream 19353 10291698 ~ 10297072 (-) True LOC122350862
XM_043246950.1 mRNA downstream 25315 10284492 ~ 10291110 (-) False zgc:112962
XM_043246949.1 mRNA downstream 25315 10284492 ~ 10291110 (-) True zgc:112962
XM_043246947.1 mRNA downstream 32063 10280303 ~ 10284362 (-) True si:dkeyp-82a1.6
XM_043247531.1 mRNA upstream 9405 10329776 ~ 10338669 (-) False gls2a
XM_043247530.1 mRNA upstream 9405 10329776 ~ 10338669 (-) True gls2a
XM_043246165.1 mRNA upstream 167419 10487790 ~ 10491200 (-) True LOC122349990
XM_043246120.1 mRNA upstream 205976 10526347 ~ 10528717 (-) True LOC122349964
XM_043246124.1 mRNA upstream 209072 10529443 ~ 10533338 (-) False LOC122349966
TU92747 other downstream 346940 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 354724 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1053599 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1659139 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1666460 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 68812 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 120393 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 219848 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 667075 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 776631 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile