RNA id: XM_043247531.1


Basic Information

Item Value
RNA id XM_043247531.1
length 3159
RNA type mRNA
GC content 0.44
exon number 18
gene id gls2a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10329776 ~ 10338669 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATGCCTCGTGGGGCGTTCAGGCACTCAACGGAAAGGACGCGACTCATAAGCACAAGACACGCGGCGTTCATTCACAACTGGTTTAGAGCTCTTATAGGTCGCGGATAAAGAAATACAAACTCGGGGCATTGATTATGCATTGCGTTAAGACCCTGCGGGCGTCCAGAGCTGGTATTTTGCTCATTAGGAACGCCGGAAAATGGGAGAGAGTTGCGGGAAATCTGGACAGAAGACACTCACCCGCTCGGCTGCTGCACACGAGCGCATCTCCAGGCCAGCATCCGCGCCATCAGCACGTGATCACGGAGACGGACGTCGCGACGTACAGCAATAAGGTGGTTGCTGGGTTGGAGGACCTGTTGTTCTACACTATTACCCAGGGAGAAGAGCAAATCTCAGTGGCCCGTTTCCTGACTGCACTCAAAAGCACAGGCttgctgacctctgacccccgGTTGAGGGACTGCATGCGGCAGATCCACCAGGCTATCCAAGAGTCTGTTGGAACGGCAATGATGGACCAGGAACTGTTCAGAAAATGTGTTGGCGGTAACATAGTCCTCCTGACTCAAGCTTTCCAAAGAAAGTTCATCATTCCAGACTTTGAGTCCTTTACCTCCCTCATAAACCATCTGTATTATAACGCAGAGGCTCAGAAAGGAGGGAAAGTTGCAAACTACATCCCTCAGTTAGCTAAATTCAGTCCGGACCTGTGGGGAGTTTCTCTGTGCACAGTGGATGGTCAGAgGCATGCTATAGGAGACACAGATATGCCATTCTGTCTGCAGTCATGTGTGAAGCCTCTGGAGTATGCGCTGGCTGTGCACGAGACTGGCACTGAACGTGTGCACAGATATGTGGGGAAAGAACCAAGTGGCCTCAAATTCAACAAACTCTATTTAGATGAAGAAGATAAACCCCATAATCCCATGGTAAATGCAGGAGCCATTGTAATCAGCTCTCTCCTAAAGCCTGGTTCCAACAAGGCAGAGAAGTTTGACTTTATGATGGATTATCTGAAGAGAATGGCTGGCAGAGAATATGTTGGGTTCAGTAATGCCACTTTCCAGTCAGAGAAAGAGACCGGTGACAGGAACTATGCGATTGGCTATTACCTCAAAGAGAAAAAATGTTTTCCCAGTGGGGTTGATATGACGGCAGCTCTTGACTTCTACTTTCAGctgTGCTCTATCGAGGTGACTTGTGAGTCTGGAAGCGTGATGGCAGCCACGTTAGCTAATGGAGGGATCTGTCCAATCACAGGCGAGCGCGTGCTCAGTGCCGAGGCCGTCCGCAACACTCTCAGTCTCATGCACTCGTGTGGCATGTACGACTTCTCTGGCCAGTTTGCTTTTCACGTGGGTTTGCCTGCTAAATCTGGGGTTTCTGGCGCTGTGCTGCTCGTGGTTCCTAATATCATGGGGGTTATGTGCTGGTCTCCAGCTCTTGATCGTGTTGGCAATAGCATCCGAGGCATCCACTTCTGCCAGGAGCTAGTTTCTCTCTTTAACTTCCACAACTACGACAATCTGAGACACTTTGCAAAGAAGTTAGACCCTCGCAGACAGACAGGACACGAGAGGaACAAGTCTGTGGTGGATCTGATGTTTGCTGCTTACAGTGGTGATGTTTCAGCTCTCAGGAGaatcGCTCTGTCTGCGGTTAATATGGAATTGACTGACTATGACACCCGTACTGCTCTACATGTGGCCTCAGCAGAAGGGCACTTGGATGCAGTAAAGTTTTTAACACATACCTGCAAAGTCAACCCCAACGCAAAGGACAGATGGGGCAACACACCTCTTGATGACGCTATGCAGTTTGGACACAGCGCCGTGGCCAAGATACTGCAAGAGTACCAgagcatttacacacacacactaatgccTGAGGAGCTCAGTGCACACACGTGTCCCGATTCCACCATAGACGTGGACGAACTGAAGAGCATGGAGACTCTGGAGGGTTTAATATGAGGGGGAACTACCATGAACATACCAAACCTCAGTCTCTCATGACTTTAGGGAAGCATGTGGGTGTGAGATTTATGACAAAGCCCATGTAAGGACTTGCTGAGCAGGTGTGCACAGGCGTTACTTCAAACCCAAAGTTTGCTACATGTAGACCTCGGCTAGCTTCTGTTGATGGTTTAAGATGGTCATTACTCTAGTCTCTCAGACCTACATTCAGTCTACTGTGGGATTATGAAACTACCAGGTGCTTTCTGGTACAGCTCAAGGACAGTTTGGTTTGTGCTTGGACCAATGTAGAAATGCAGAAGCTTGCTTTCCCTTCACATTTATCACTACAGAgggatttttatatttaaaacacacccTTAACTGGAAGGGTAGCCAGTTGGattcacaaatacaaaaaaatactatttatactTGCAAGATAGCATACactcataaaatataaaaggatggcattttgagaaatgtagcTCTTGAATATGTTCCCAagaaaatatgtgaaaatatattttcaagaaCTATTCAAAAATTACTCGTAccatattttaaatctattgGACTTTATCCTAAGCACTTTCTTTACTTCTTTCATAGGAAGAATTTTTCAAGTGCAAATGTAAATTTAGCAGGTTGTTTACCAAGAAAAGCATGCATGCACATTAAAAAGTagttacataattacataaacatACTGGAAATGTCATTACCTCATATTACCTTCAGGAGGTTGGCAAGCCAGTATAATGTGAACCTTAGCCCAGTTGTCCGTATGGCTAAGCTTTCCATGTCATTTAAGTTATTAATAATCTTTGGCTTAACATTGAAGCacgtatttgtatatttgtactatttttaatgACTGAATTTCATAAGCTTGTTTATAGACTTTTATAGACTCTTTTTGTAAGGTATTGCAtaatttaaaagacattattttaatgtaggGCACAAACGCTTTAACTGAACCTGCTTAGGAAGCATCTGGTGCTTATTTAgccagaaatgcatttaaaacttgGTACGTGGACGCACTGTATtgctggagagagaaaaaagtttgtatAGTTGAAAGTGTATTCATTGgaaagtaaaaagtaaatgcaAGATGGACAGATTGGAAGGAAACAAGACAAGAAAAATGGATgtataaactgtaaataaagaACATCACTAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92967 lncRNA downstream 2568 10325741 ~ 10327208 (-) True G62817
TU92955 lncRNA downstream 27891 10301662 ~ 10301885 (-) True G62805
TU92949 lncRNA downstream 65015 10263818 ~ 10264761 (-) True G62800
TU92943 lncRNA downstream 76520 10250633 ~ 10253256 (-) True G62795
TU92944 lncRNA downstream 77541 10250633 ~ 10252235 (-) False G62795
TU92973 lncRNA upstream 31664 10370333 ~ 10373331 (-) True G62821
TU92977 lncRNA upstream 43048 10381717 ~ 10443630 (-) False G62824
TU92982 lncRNA upstream 43048 10381717 ~ 10443630 (-) True G62824
TU93013 lncRNA upstream 45051 10383720 ~ 10484599 (-) True G62829
TU92996 lncRNA upstream 45311 10383980 ~ 10484599 (-) False G62829
XM_043247452.1 mRNA downstream 9403 10316425 ~ 10320373 (-) True cpt2
XM_043247453.1 mRNA downstream 9405 10316425 ~ 10320371 (-) False cpt2
XM_043246944.1 mRNA downstream 29470 10298359 ~ 10300306 (-) True tmco1
XM_043247622.1 mRNA downstream 32704 10291698 ~ 10297072 (-) True LOC122350862
XM_043246950.1 mRNA downstream 38666 10284492 ~ 10291110 (-) False zgc:112962
XM_043246165.1 mRNA upstream 149121 10487790 ~ 10491200 (-) True LOC122349990
XM_043246120.1 mRNA upstream 187678 10526347 ~ 10528717 (-) True LOC122349964
XM_043246124.1 mRNA upstream 190774 10529443 ~ 10533338 (-) False LOC122349966
XM_043246122.1 mRNA upstream 190774 10529443 ~ 10533338 (-) True LOC122349966
XM_043246747.1 mRNA upstream 487760 10826429 ~ 10961990 (-) True LOC122350349
TU92747 other downstream 360291 9961797 ~ 9969485 (-) False mllt1a
TU92748 other downstream 368075 9954750 ~ 9961701 (-) False mllt1a
XR_006251623.1 other downstream 1066950 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1672490 8652426 ~ 8657286 (-) False pola2
TU92043 other downstream 1679811 8647281 ~ 8649965 (-) True mrps36
TU92903 other upstream 50514 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 102095 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 201550 10540219 ~ 10540291 (-) True trnar-ccg_26
TU93206 other upstream 648777 10987446 ~ 10990704 (-) False cep104
TU93213 other upstream 758333 11097002 ~ 11131207 (-) False LOC122349915

Expression Profile