RNA id: XM_043247642.1


Basic Information

Item Value
RNA id XM_043247642.1
length 1637
RNA type mRNA
GC content 0.50
exon number 13
gene id spata6
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7677496 ~ 7687562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTCGCTCGGGCTGTTGTCACAGCAGCCAAGTTTGAAAACATGGGCGGACTCACGCCGCCTAAGACGCCTTCAGGTTCTCAAATGCGACAAAAAGCGTTAAAATGCACCGTCGAGGTGGATATTCAGTCTATAACTTGTCCAGGGGTGGTGTTACCGTCCCAAGAAGACATTTATGTGAGTGTTAGGATAATGGGCCAGTATCAGAAGACCAGGTGTGTCCCTCCAGTTTTCCCTCTGCTGCTGCATGAAAAAATGGTCTTTGTGAAAACCTTTGCTGGAGCAGTTGACCCGGGTGCTGTAGCTGAGCATCTGGAAAATGATACAACATCTTTAGAGCTCATTCAGCTTGTTCCTCCAGAGGGTGAGATCCTGGCCACGTTTGAAGAAGACACCCGGGAGTTTCTATATCCAGGCCCTCGTTTGACTCCCAGAAGCCCCGgcccagagagagagattctgaTGAAGAGATCCATCTCCTTCCCCGGAATCTCTCCGAAAGTGGAGTTTTCAACGACGTCTATTATTGAGGAGTGTGATGTGAAACATGGTCAGCCTGCCATGTCTTCATGTGGCCGTTCCTCAACTATGCCTTGTTCTGTGAGAACGTCCCCTGCAAAGTCAAATAGGAAGAAAAAGCCAGGCATAGTGCCATCCTGTGGATACGAAAAGCCAACGGTGGCGTCCCAAAGCCGTGCTCCTTCACCCTACACCCACCGCAAGATGTGTCAGCTGTCTGAGGAGGCCAGACAACGACTCGGCCACCTCAAACTGGGGCcctacacatttaaaaaagagaCGGTCCCTCAGGCTCCGTTCGTGGTGCCCCGAAGCCCAAACACGTCACTGATGGAAACCTCCATGTGTTTTGCATCTCAGTCTTCTTCTAAAAGAGGTTCCCTACGTCTGCAATCACGGAGCTACTCCAAAGACCACACAGATCCATCTCTCCTGGGAAGTTTCAGATCAAAGCCTTCACATGCTTCCACGCTAGCAGCTTCTCCTAAAGATCACTCCACCCCTGTGTCCAGCACGTTCAGAGATCAGAGTCCAGTCCTGTCTCGCTCTTCCCTGAGAGAACGGTTCCAGAGTTCATCCAGTCCCTCCCAGTCGGATGAGATCCACAAACGAGTGCAGAGAATCCTAAACATCCACGGGCCCCGCTGCAAGCTTTCGTTTgATGAGGAGATGGAGAAGGAGGAGGGGGTCAGACAGAGTTCACATGTTTTCACCCACCATGACTCTGTGATTGACAGCCGGCTACAGCAGGACAGACTTATTCCTGGAGAACcatctgttcatttaaacaacGGAACATTCTGGACTAACCGAGCGGCTGCGTACACAGGAAAGCCCCACAGAGCTGTGTTTGAGGACAGTTTGAACAAAATCTACAAGAACCTTTACAGCCACGCATCACAGACAGGACACAGTGACCTAAGCACCTGGACACAGTGATCACATTGaatgaatgtatttgtttatgtatgGTAAATCAAATCAGGAAAACAGTATGGGTGGAGGGCGTTTGACCATATACTTTTAACTTCCATAATGGTGACAGCATTAACAAAGCACAAATCCACTTGCTCTGGGCCTGATTTATTGTGTCTTCACCGCTGTAATCAACTGCtatcc

Function

GO: NA

KEGG:

id description
K23224 SPATA6; spermatogenesis-associated protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91746 lncRNA downstream 14237 7662217 ~ 7663259 (-) True G61959
TU91596 lncRNA downstream 129173 7545810 ~ 7548323 (-) True G61868
XR_006251632.1 lncRNA downstream 283287 7390288 ~ 7394209 (-) True LOC122350888
XR_006251630.1 lncRNA downstream 299037 7377755 ~ 7378459 (-) True LOC122350886
TU91592 lncRNA downstream 369156 7306112 ~ 7308340 (-) True G61865
TU91765 lncRNA upstream 62141 7749703 ~ 7778564 (-) True G61965
TU91770 lncRNA upstream 191855 7879417 ~ 7974020 (-) True G61967
XR_006251635.1 lncRNA upstream 263999 7951561 ~ 7954642 (-) True LOC122350891
TU91781 lncRNA upstream 522481 8210043 ~ 8217417 (-) True LOC122350139
XR_006251572.1 lncRNA upstream 529457 8217019 ~ 8232774 (-) False LOC122350139
XM_043247630.1 mRNA downstream 25190 7594983 ~ 7652306 (-) True LOC122350867
XM_043247652.1 mRNA downstream 294684 7380546 ~ 7382812 (-) True LOC122350884
XM_043247357.1 mRNA downstream 299739 7375035 ~ 7377757 (-) True LOC122350680
XM_043247636.1 mRNA downstream 307041 7363235 ~ 7370455 (-) True LOC122350872
XM_043246337.1 mRNA downstream 508723 7137062 ~ 7168773 (-) False cep350
XM_043247648.1 mRNA upstream 1299 7688861 ~ 7740456 (-) True LOC122350881
XM_043247643.1 mRNA upstream 62853 7750415 ~ 7763209 (-) True bend5
XM_043247644.1 mRNA upstream 62853 7750415 ~ 7762298 (-) False bend5
XM_043247360.1 mRNA upstream 349060 8036622 ~ 8137275 (-) True agbl4
XM_043246326.1 mRNA upstream 584922 8272484 ~ 8275399 (-) True dmrta2
TU91479 other downstream 576564 7094898 ~ 7100932 (-) False lhx4
TU91442 other downstream 860772 6814488 ~ 6816724 (-) False LOC122350104
TU91179 other downstream 1234514 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 1752149 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 2059832 5614329 ~ 5617664 (-) True G61513
TU91784 other upstream 429446 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 704783 8392345 ~ 8416553 (-) False eps15
XR_006251692.1 other upstream 740053 8427615 ~ 8427687 (-) True LOC122351129
XR_006251691.1 other upstream 741263 8428825 ~ 8428904 (-) True LOC122351128
XR_006251695.1 other upstream 741691 8429253 ~ 8429320 (-) True LOC122351132

Expression Profile