RNA id: XM_043247751.1


Basic Information

Item Value
RNA id XM_043247751.1
length 2642
RNA type mRNA
GC content 0.42
exon number 10
gene id calr
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8417430 ~ 8422195 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCCATCTGTTCCCAGTCTAGAGGCGAGACTGAGCGAAAGAGAGCAGCGCACAGTGATTTCTGCAGagcatatattttttactgcAAAGATGACAGCGTTGTCTCTACTGTTTATGAGCGTGTCCATCGCTTTAATAACTGCAGAATCATCTGTTTATTTCCGAGAGCAATTCGAAGACGGTGACACCTGGAGGAGCCGATGGGTGGAATCCAAGCATAAATCAGACTACGGGAAGTTTGTGCTCTCTGCAGGCAAATTTTATGGCGATGCCGAGAAAGATAAGGGTCTTCAGACCAGTCAGGATGCTCATTTCTACGCGCTGTCGGCCCGCTTCGCTGATTTCAGCAACAACGATCAGCCCCTTGTGATCCAGTTCAGTGTAAAACATGAGCAGAGCATTGACTGTGGTGGAGGCTACATCAAACTTTTCCCATCAGACCTCAAACAGGAAGATATGCATGGAGACTCCACATATAATATCATGTTTGGTCCTGACATCTGTGGCCCTGGAACCAAGAAAGTACATGTCATTTTCAATTACAAAGGCAAAAATCATTTGATCAACAAAGACATTAGATGCAAGGATGATGAATACACCCATCTGTATACGTTAATTGTCAATCCTGACAACACTTATGAAGTCAAGATTGATAATAAGAAGGCGGAGTCTGGATCTTTGGAAGAAGACTGGGACTTCCTGCCTCCCAAAAAGATCAAAGATCCCGAAGCGAAAAAACCTGAGGACTGGGACGAGAGAGAGAAGATCGACGACCCTGATGACAAGAAACCAGAGGACTGGGACAAACCTGAGAACATCCCTGATCCTGATGCCAAGAAGCCTGATGACTGGGATGATGAGATGGATGGGGAGTGGGAGCCGCCCATGGTCACCAATCCAGAATACAAGggTGAGTGGAAACCCCGCCCCATTGAGAATCCTGCTTACAAGGGGAAATGGGTGCACCCTGAGATTGATAACCCGGAGTACACCGCTGACAACGAAATCTATAAATACGATAGCATCGGAGTGATTGGACTGGACCTGTGGCAGGTAAAATCTGGCACAATTTTTGACAACTTCCTTATCACCAATGACCCTAAGGTGGCAGAAGAGGTTGGCAACGAGACTTGGGGTGCCACAAAGGATGCTgagaagaagatgaaggaaggtcaagaggaggaagagagaaagaagcgtgaggaagaggaaaagacaagaaagGAGGAGGCAAaggatgaggaggaagaagaaaaggaagaggaagaagaggaggaggaggaggaagaggaagaagaagaggaggaggaggaggaagaggaaacaGACTCTAAACTCAAAGACGAGTTGTAGATTTCAACAGGAACTTGTGAAGAAATGCCCCATGACTAATGGGGTGCAAGGCAGAGAACTGGACTAATGCTGGACATTCCTTTTTGTTGTGTGTCGGATGATTCCGgcaggatttatttttttgtctcatttcactactACAAACCTATTTAtagattaacttttttttcataatttttcatttgcatgATGTTAAGCAAAGTCCCAAGCGTTTTCAGTCGGGCGGGGTTGAAGGCAGCCAACATGAAAATCGTACATCCCCATCTGTAGTGTGAGATGTGATCCATAAAAAAATTCAACGCTCATGTTTACATATGTCAGATATCCTGTTTGCTAAGCAATTCTGTGACACGAAACTTGAATCATAACAGTCATCAACTGGTAGCTACATTACACTAGAATAATTACCTCAAAAAACATTGACGTTATctattttattgattatatgGAGCAATTTTGAGGTACTGTTGCTGCCATTTCATTACCATTTCACTTCTGTTACAGAATATGCAGAGTTGTTTAGATGTCATTTCATCTGTAGCATTTTGGCTTGACCAAGTtttgcgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggtttgaGAGAGTCCTCACTTTATTGCATGTTTCATCTTAACCCAAACCTCAAATTCATAACCTTTTCCTCGCTCTAAATATCAGTCTATCAGTGGCCAAGTTAAAATCTCGGTCGTGTACTTTCCTAACACACTGTGGATCTCACAAGCTGATCAGTTTTTATCTTTTCCTGGTCAGCAAGCAAATTTTGACTGGTTTCTCAAGAGTAGAAATGAATTTCCTATTCTGGTTGACCGAATATTTGGAGAAAGTCAATTAATATCAACAATGATTTCTGAGTAGCTACAAAGCTCTTGTGTGTTTGCTTTGGTTCTTTTCTTTAAGTGAATCGCTGGTTTATTGAATTTGGCAGATACGGTTATCAGACCCAAGCTGAACCTGTGGAGTGTGGGGAAAAATGGAAAGCTTGTGAGATTTCAGGAGTGTTACAAAGAAAGTTCCATAGCGATTCTAGTAACTCTTCTGCTCTCCAACAGAGATTTCACAGCCATTGTGAATATTGCACTGCTGTACTGCTTCAATCAGATACTTCTCCCAGCAAAATAGATtgtgaccttttttttaaagatatattttgtactttttgtgttTGAAGGATGTTCCTTGACATATTGAGAAGAAAAGCTCTAGTATGAAAGTTGTTGTCcaataataaaagtacaaaaggaGTAATATA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251686.1 lncRNA downstream 148213 8253538 ~ 8269217 (-) True LOC122351107
XR_006251685.1 lncRNA downstream 148213 8255469 ~ 8269217 (-) False LOC122351107
XR_006251572.1 lncRNA downstream 184656 8217019 ~ 8232774 (-) False LOC122350139
TU91781 lncRNA downstream 200013 8210043 ~ 8217417 (-) True LOC122350139
XR_006251635.1 lncRNA downstream 462788 7951561 ~ 7954642 (-) True LOC122350891
TU91913 lncRNA upstream 5090 8427285 ~ 8430135 (-) True G62076
TU91990 lncRNA upstream 85696 8507891 ~ 8508123 (-) True G62120
XR_006251637.1 lncRNA upstream 289842 8712037 ~ 8739931 (-) True LOC122350893
TU92069 lncRNA upstream 290028 8712223 ~ 8739953 (-) False LOC122350893
TU92070 lncRNA upstream 290028 8712223 ~ 8713432 (-) False LOC122350893
XM_043246729.1 mRNA downstream 877 8392345 ~ 8416553 (-) False eps15
XM_043246730.1 mRNA downstream 877 8392345 ~ 8416553 (-) False eps15
XM_043246728.1 mRNA downstream 877 8392345 ~ 8416553 (-) True eps15
XM_043247944.1 mRNA downstream 25936 8372657 ~ 8391494 (-) True ttc39a
XM_043247945.1 mRNA downstream 29731 8372657 ~ 8387699 (-) False ttc39a
XM_043247881.1 mRNA upstream 544 8422739 ~ 8426706 (-) True tor3a
XM_043247873.1 mRNA upstream 8998 8431193 ~ 8457234 (-) False osbpl9
XM_043247872.1 mRNA upstream 8998 8431193 ~ 8457234 (-) False osbpl9
XM_043247871.1 mRNA upstream 8998 8431193 ~ 8457234 (-) True osbpl9
XM_043247875.1 mRNA upstream 8998 8431193 ~ 8449770 (-) False osbpl9
XR_006251596.1 other downstream 877 8392345 ~ 8416553 (-) False eps15
TU91784 other downstream 200013 8117008 ~ 8217417 (-) False LOC122350139
XR_006251629.1 other downstream 729868 7678416 ~ 7687562 (-) False spata6
TU91479 other downstream 1316498 7094898 ~ 7100932 (-) False lhx4
TU91442 other downstream 1600706 6814488 ~ 6816724 (-) False LOC122350104
XR_006251692.1 other upstream 5420 8427615 ~ 8427687 (-) True LOC122351129
XR_006251691.1 other upstream 6630 8428825 ~ 8428904 (-) True LOC122351128
XR_006251695.1 other upstream 7058 8429253 ~ 8429320 (-) True LOC122351132
XR_006251694.1 other upstream 7279 8429474 ~ 8429544 (-) True LOC122351131
XR_006251693.1 other upstream 7499 8429694 ~ 8429774 (-) True LOC122351130

Expression Profile