RNA id: XM_043247781.1


Basic Information

Item Value
RNA id XM_043247781.1
length 1493
RNA type mRNA
GC content 0.49
exon number 9
gene id lpxn
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9852232 ~ 9856606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTTTCACATTTGACATCGGGCTCAACCCACAGCTGCATGTATCAGATCACCCTACCACACATGCTCACTAGGAACACACAACGCACGCTGCTTACCTCTCATCTCACAGCCCAGACCACAATGGACGAACTCGACATGCTTTTAGAGGAGTTGGCTCAGAACTCCACCCAGACTTCTGCACCCATTCCACCCAAAACTCTCCAACTGGGAGCCTCGGTTAAAAGTAACAACATATCCCAGCTTGAACAAACCGGTCCAGGAAAGCCATGTAATCCTTACAGTGTGGTTCCGGTCCCTGTGGAGGCCGGAGTGATGAGTCCTGGCACAGCTACACGAGAGCTGGACTCCATCATGAATGATCTGCTAGGGCTAGGCCTGGAGATTCTGGAACCAGTTCCCACATCCAACCCGCCTCCATTGGCTCACAAATCAATGAAAGGCAAAAAAACGGAGGAAAATAAAGGAAGTGATGGTGGACAGGAACCACAGCATCCTCCTCTGTCAGAGAAAGCATCCAAGAATGTGGATGCTATAGACGACTTGCTGGGCTCTCTCACCTCAGACATGGAGAAAATGGGGGTCCAGACAGCTGCCAAAGGCCACTGTGCTTCTTGTGGCAAGTGTATAGCTGGGAAGATGATCACAGCTCTGGGTCAGGTGTGGCATCCCGAACACTTTGTGTGCACGGCATGCAGGGAGGAACTGGGCACGTGCGGTTTCTTTGAGAGAGATGGCAAGCCGTACTGTGAGAAAGACTACCAGAACCTCTTCTCCCCTCGCTGTGCTTACTGCAAGGGTCCTATTATTCAGAACATTCTGACAGCGATGGATCAAACATGGCACCCAGAACATTTTTTCTGCAGCCACTGTGGAAATGTGTTTGGACCTGATGGGTTTATGGAGAGAGATGGTAAACCATATTGCTCTAGGGATTTCTACCGTCTCTTTGCACCCAAATGCTCCGGCTGTGGAGAGCCAGTGAAGGAGAACTATCTGTCTGCAGCCAATGGAACCTGGCACCCTGACTGCTTTGTCTGTGCGGACTGCCTGAAGCCTTTTACAGACGGTTGCTTCCTGGAGTTGAACGGTCGGCCCCTCTGTTCCCTGCACTATCACTCCAGACAGGGCACTCTGTGTGGGACCTGCGGAGAGCCCATCTCGGGTCGCTGCATCGCTGCTCTGGACCGCAAGTTTCACCCTGAACACTTTGTGTGTGCGTTCTGTCTTCGGCAACTGAGTCAGGGAGTGTTTAAGGAGCAGGGAGGGAAGCCGTACTGTTCGGTTTGTCATGCCAAACTCTTCgtgtgaaaaatcacatttctcACTTGAATACAATCTTTCAGAGCAGGGGTTCTCAACCTTTTCGAGAACCCCCCCAcctacaaaataatacaaatgaatatactaatatattagaaaatatatgaaaattgGATTCCGGGATTGTTAAAGCTTGTATTTTCCtcaataaaaactgtataaaaattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92632 lncRNA downstream 120078 9731906 ~ 9732154 (-) True G62576
TU92619 lncRNA downstream 141236 9710646 ~ 9710996 (-) True G62568
TU92618 lncRNA downstream 143011 9708973 ~ 9709221 (-) True G62567
TU92617 lncRNA downstream 144038 9707773 ~ 9708194 (-) False fam78bb
TU92616 lncRNA downstream 148634 9703376 ~ 9703598 (-) True G62565
TU92749 lncRNA upstream 138961 9995567 ~ 9997484 (-) False adamts10
TU92768 lncRNA upstream 186582 10043188 ~ 10043398 (-) True G62670
TU92889 lncRNA upstream 198445 10055051 ~ 10057928 (-) True G62749
TU92911 lncRNA upstream 220811 10077417 ~ 10077652 (-) True G62768
XR_006251619.1 lncRNA upstream 271279 10127885 ~ 10150991 (-) False LOC122350767
XM_043246023.1 mRNA downstream 14782 9786252 ~ 9837450 (-) False trabd2b
XM_043246021.1 mRNA downstream 14782 9786253 ~ 9837450 (-) True trabd2b
XM_043246020.1 mRNA downstream 14782 9786253 ~ 9837450 (-) False trabd2b
XM_043246022.1 mRNA downstream 14783 9786253 ~ 9837449 (-) False trabd2b
XM_043246019.1 mRNA downstream 14783 9786255 ~ 9837449 (-) False trabd2b
XM_043246908.1 mRNA upstream 43890 9900496 ~ 9933011 (-) False rfx2
XM_043246907.1 mRNA upstream 43890 9900496 ~ 9933011 (-) True rfx2
XM_043246909.1 mRNA upstream 43890 9900496 ~ 9933010 (-) False rfx2
XM_043246038.1 mRNA upstream 98075 9954681 ~ 9969460 (-) False mllt1a
XM_043246037.1 mRNA upstream 98075 9954681 ~ 9969460 (-) True mllt1a
XR_006251623.1 other downstream 589406 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 1194946 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 1202267 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 1202267 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1422458 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 98144 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 105191 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 532577 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 584158 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 683613 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile