RNA id: XM_043247809.1


Basic Information

Item Value
RNA id XM_043247809.1
length 2114
RNA type mRNA
GC content 0.46
exon number 6
gene id zgc:92140
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9581828 ~ 9605966 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTTCAGCAAGATGGCTGCAGTTCTTCGAGCAAATCAGGAGTGCAGGCTGTAAGCCAGCGGTCCACATCACTACAGCAGCGCTTATTCCGTCTGCGTGTGTAGTgcgtgtagtgtgtgtgtgcgtgcgtgtgtgtttatgtgtgtatgtgagccGCCGCCAGTGGACCGAGCGGGTCACTTCTGACAAgTGAGATGGTGAGATGGTGAGAGGGGGGAGGGAGTGAGGCCATGGGCTGCACCTCGGCTAAGCAGGTGTCGGCTGTGCCCAACGACGAAGAGGGCCGGGGCAAAGCCTACAGCAACGGAGACCTCTTCACcgATGAATATAAGATGAAGGGAGTGGAGGAGGTGAAGTACATGCGTGGAGAAGAAGACAGAGTAAACGCACGCAACCAGGAGAACCTGGAGAAGAGCTCGACGCAGCACAGGACCAAACAGCACAAAGAGGTGCCTGGGCCCAGCGCCAACAAGACGAAcatACATACGTCAGAGAGTCAGCAGGAGTTCTTCAGAATGCTGGATGAGAAGATTGAGAAGGGGCGGGATTACTGctcggaggaggaggaggaggatgtgACATAGCAGAGAGGCGCCAGATCTTGCCAGAGATGGAAATAGAGAGTGtgaactcaaaaaaaaaaaaaaatcagtgtttcCTATGTCTGTAACACTCTGTCGGTCTGAGAGCGAGTGTGCGTGCGAGTGCGTGAGAGTGTATgattgtgagagagagagagaatgcaggACTTTTCCTCATAGGCTGTTGCACCCTTGACCCCTTCTCCTCTCTTGGGGTTGCCTTGCTGGGAGATCTAGATGGTTTTGGGTGAAGAAAGAACAGCTTGATTGATGTATTATCAACACGGACTCACTCTGACGTGAAATGAGGACCCCCGTCCCCCTCCACTCCTCCTATGGCCAGCAATGAAACGGCCCCCTCGCTCCGCCTGGCTGTGACGAAGccatctgagagagagaaggagagattaTGTCGAGGAAAGCGAGATGAAAGGAtacggagagagaaaaagatgacATGCCCCTCCCAGTCCTCGTTTTAAGTGGCAGGACAGAGAAAAAACTGACATATGGAGGAACCAGAAGAGAGCTTACGAACATCCTCTGGAGATAACGGGGAGTGAATGTAAAGATGGagtgttgtgtgtttttggggGAGAAATTATTGAACaagaaagatattttattaAGAGCGACTATATGAACGAACTGGCTGATTATTTTGATAAGAGCGTTGCGGCAAGTTTTTGAACATTTGAGTTTGGACTCCTGCCTTTTGAAGGACCTTTTTTAATTTCCTCAagattgatttgtttgttccataaatgtttttttttttttttttttcgcttgtTGCTTAGATCATACCTCTTCAAGCTTGTGCTGTAAAGGTCAGGGCTGTACGGTGACCCCAtaacacactcgctcacacacacggaAAGTCTTAAAGCTAAAATTATCACCACACCCTCTTTCCACACACAGGTTCACACTTTCATTTTGTATAtcctgctattattattatataaagttCTAAGAAAATAGACGGAAATACTGTCAGACTAGTTACCCCCACACACATCCAAATATATACCCGGCAAAACCGGCAACATTTAACTTAAAGATCCATATTGACCGTTTATGCTGCCCTTTAATACAGGTAATGGACTGTGAAGAGACTATGGCAGATAACTGGGGTTGTCTGTGTTGTGTCGAGGGCTGTATTTGTGTTAATCTGTGTCAGAGAACCAGGTCTTACTGTGTTAATCTTTGTCAAAGGGATGAGGTGTTTGTCTTAGGCCTGTATGTGTTTAGCTAGTGTTTACCTATGTTTCCCACCCTGCCTTTCTTACTCAGACGTATTCAGTGTTGGCTTAAATTAATTATCTTTGTCTCTTATCATTCATAGACCTATTCTAGACCTTAGTAGTATGAGGTGGGGTGGGGTCACTTTTTTGAGGGGGACAGCGCTGGCCGAGCATTTGTCATTATGATTACTGGATTgattcctttttcatttttattttcaatgttttctttttctattaaaatataagacACAGGAGCTGTGGTTTCTGTGTGCTGTCTCACCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92557 lncRNA downstream 54862 9526627 ~ 9526966 (-) True G62525
TU92550 lncRNA downstream 167389 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA downstream 167389 9408414 ~ 9414439 (-) False G62519
TU92265 lncRNA downstream 496634 9082795 ~ 9085194 (-) True G62293
TU92206 lncRNA downstream 543364 9030865 ~ 9038464 (-) False G62250
TU92615 lncRNA upstream 96993 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 97410 9703376 ~ 9703598 (-) True G62565
TU92617 lncRNA upstream 101807 9707773 ~ 9708194 (-) False fam78bb
TU92618 lncRNA upstream 103007 9708973 ~ 9709221 (-) True G62567
TU92619 lncRNA upstream 104680 9710646 ~ 9710996 (-) True G62568
XM_043246179.1 mRNA downstream 1975 9562094 ~ 9579853 (-) False colgalt2b
XM_043246178.1 mRNA downstream 3811 9562094 ~ 9578017 (-) True colgalt2b
XM_043246992.1 mRNA downstream 29524 9528966 ~ 9552304 (-) True rgl1
XM_043246993.1 mRNA downstream 39294 9528966 ~ 9542534 (-) False rgl1
XM_043247902.1 mRNA downstream 55767 9521721 ~ 9526061 (-) False plin3
XM_043247436.1 mRNA upstream 539 9606505 ~ 9618126 (-) False edem3
XM_043247437.1 mRNA upstream 539 9606505 ~ 9618126 (-) False edem3
XM_043247434.1 mRNA upstream 539 9606505 ~ 9618126 (-) True edem3
XM_043247557.1 mRNA upstream 94428 9700394 ~ 9708621 (-) True fam78bb
XM_043246023.1 mRNA upstream 180286 9786252 ~ 9837450 (-) False trabd2b
XR_006251623.1 other downstream 319002 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 924542 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 931863 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 931863 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1152054 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 348784 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 355831 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 783217 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 834798 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 934253 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile