RNA id: XM_043247873.1


Basic Information

Item Value
RNA id XM_043247873.1
length 3656
RNA type mRNA
GC content 0.44
exon number 23
gene id osbpl9
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8431193 ~ 8457234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGCTCCTCCCCGCGAGCACTCAGGCAAAGTGTAAAAATGGCGTCCATCATGGAGGGGCCGCTGAGCAAATGGACTAACGTCATGAAGGGGTGGCAGTACCGCTGGTTCGTACTGGACTATAACGCCGGCCTGCTGTCATACTATACTTCCAAGGACAAGATGATGCGTGGCTCTAGAAGAGGTTGTGTGCGACTACGGGGAGCTGTGATTGGAATCGATGACGAGGACGACAGCACTTTCACCATTACCGTGGACCAGAAGACTTTCCATTTTCAGGCCCGTGACGCAGACGAGCGGGAGAAGTGGATTCATGCCTTAGAGGGGACGATTCTTCGCCACACCCTTCAGCGGGAGGCAGAAACAGGATTCGTTCCCAGCGTTCAGGACTTCGACAAGAAGCTAGCTGAAGCAGATGCGTATTTGCAGATTTTGATCGACCAGTTAAAActttttgatgaaaaaattAAAGACTGCAAGGAAGATGAGTCACGCAGAAAAATCGAGAACCTGAAGGACACGACTTGTaGTATGGTAGAGTCCATCAAACACTGTATCGTACTACTACAGATTGCCAAGAGCACCATAAACCCAGTGGATGGGGTATTCCAGCCTACCCCTCTCAACACTTCTGTAGTCAGTGCCAGTGCCATGCCAACACAGACCACTCTACCCACAGATGGAGCTCAGGTGTGTAAAACGGAACAGAGGCCTTCTTCTTTACCCGTGGGCCCTGTTGTTACGGTGATGGGCAGCCTTCAGACCCCCACTCCCAACAGCACAGGGAGTGGTCCTTCAGCGCCGAGCAGCAGTGTGACTTCGCCCAGTCACATGAACGTACCGCCCCACACCGTCCCTGACTTCTCCTATTCCAGCAGTGAAGACGAGTTTTACGACGCAGATGAGTTTTATCAGAGCAGCACCTCACCAAAACACTGCATAGATCCAAACAGAACTGCCGCTGTGAACAGTGAAGACGGCACGGCCCTGAAACGGCCAGACACCAACGAATCAATCAACTCCTCCATGTCGAACGGCACCACTGACGCAGATCAGTTTGACAGTCATGATGAGAAAGATGATGACGGCGAGGGTGAGTCCGTGGAAGAACACAAAAGTGTCATCATGCATCTGCTGTCTCAAGTGCGACTGGGCATGGATCTCACCaaaGTTGTCTTGCCGACATTTATCTTGGAGCGGAGGTCGTTACTGGAAATGTATGCAGATTTCTTTGCACACCCAGATTTGTTTGTAAGTATTGCAGAGCAGCAGGATCCAAGGGACCGCATGGTGCATGTGGTAAAGTGGTACCTCTCAGCCTTTCACGCTGGTCGGAAAGGATCTGTGGCCAAGAAGCCCTACAACCCCATTCTGGGTGAGGTGTTTTTCTGTCACTGGGACCTGCCTACCGAAACAGAGGATCTCGCTGCTTCTGTGAGTAAGTCTGTATCAGATGGGCCAGTGCCGTGGAGTAGCAAAAACAGTGTGTCATTTGTGGCAGAGCAGGTTTCTCACCACCCTCCTAtatctGCATTTTATGCTGAATGTTTCAGCAAAAAAATCCAGTTCAACGCCCACATCTGGACAAAATCAAAGTTCCTTGGAATGTCAATCGGTGTCCATAATATTGGTCAAGGTTGTGTGTCTTGTCTTGAATATGATGAGCACTATATTCTCACTTTTCCCAATGGCTATGGGAGGTCAATCCTCACTGTTCCATGGGTTGAGCTGGGTGGAGAGTGCAATATTTCCTGTTCCAAATCTGGCTACAGTGCCAATATAGTTTTCCACACCAAACCATTCTATGGTGGAAAGAAGCACAGAATAACTGCAGAGATATTCGCTCCCAGTGATAAGAAGTCATTCTGCTCCATAGAGGGAGAGTGGAATGGTGTGATGTATTCCAAATTGGCTACCGGGGAAAATGCAGTATTCATTGACACAAAGAAAATAGGAATTATTAAGAAGAAAGTGCGGAAATTGGAGGACCAGTTGGAATATGAATCCAGAAGTTTGTGGAAGGACGTGACCGTGAACCTGAAACTGAAGGACATCGATGCTGCGACGGAAGCCAAACACAGGCTGGAGGAGAAACAGAGGGCGGAGGCCAGAGAACGGAAGGAGAAGGAGATGCAATGGGAGACGAGACTGTTTCATGAGGATGGTGAATGCTGGGTCTATGACAAGCCTCTTCTGAAGCGACTAGCATCGCAACGACACTGAGGCCCTTTCCAAAACCCCGGGAGTCTAGAAAACAGAACTCTCTTGCAAACCACTTTTCTTATTCAGCCTTGGAATAACCGACGAATGAACCCTTACAGCTTTGCATTTTCAAAGTTTGAACGAATGatgagaagaaaacacaaactttaattaatacaaataaaaaagaaaacaaacaaaatcctCCCTGCGACACTAGTTCAACACTTCCACCTCTCTATCACCCTtcgaggaagaaaaaaacccaccaCGAAACACGCAGAAGACGTGATCGGAAGCCCTTTAGCATCACAAATCAAAGAAACGCTCTCGTCTCGGCAAAGGAAGAACGATCCCAGCggacgtctctctctctttctcccactCCAGAGGGGTTGAGGTGTTTTTATCGAACAAACTCTGAAAACTACAGCGTTCTGTATCTCAGGGAAGCAGCGGACTGAGGATTGAAGGCTGTATCTTTAATGTTCGAAAAGCCTTAACGGTGGAACCACAGAGTAAAGAAAATGAGAACTTGGTTCACATACTGCTAGCCACAGctatttatatagatatatagaagATACAATATAttcttgttttccttttatCTTCTTTCTCTAGGGCAATAGTAACTGTTTGAATATACGTACTTGACAGCAGCCATTCCCTTTATGTTCCACTCCGTCATCAGCCTTTCATTTCACAAAAGCCACAATAAGAAAATTTACCATTTACATTAAGGGGCTCAAATTTGAGACAGCTTTGTCATGGTTGTAATCCAttccaattctttttttttttttttttttttttttttggaatgattTGATATGATCTAGAGCCTGATTGAGTGTCCACATAATTTATAAACTTAGTATAAAGTTGGATGGTCCAGTAGGAAATAGTAACGTGCACAATAAAACTATTTGACAACTCTGTGCTTATCCCACCGAGGTCAAGCAACGTTATCACAAATTGCCCTGcaatctccctctctctctctctctgtgaaatgtcacattttaatccaaataaatatacatttcatatagtCATGCATCAGAAAGAATTGATTCTCTTTTTGAAGGTAAAAGTAACAGTCTGTAGATGCATGGAGTCACTCAGGTCAGTGTTTTCTCCTGGAATGACGGCTATACATTGTGTAACGTTACCAACAAGCAAAATCAAAttgtattatctttttttttttttttttttttttttggagatgcAGTTAGAGCAAaactggcaaaacaaaacattattacagCTATAGCTAAAAGAAAGCCACTTGCTCTTCATGTTATGTAATGAATTGGAGGCCTTAAGTCAAATTTACTTTGCCTAGTATTGCGTTTCAGAACCAATcccaatttttttctttgcctgACAACAGTTGATTGTACCAGATTTCCAtgtatcaaaatataatattaaatctcAATGAGACCA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91913 lncRNA downstream 1058 8427285 ~ 8430135 (-) True G62076
XR_006251686.1 lncRNA downstream 161976 8253538 ~ 8269217 (-) True LOC122351107
XR_006251685.1 lncRNA downstream 161976 8255469 ~ 8269217 (-) False LOC122351107
XR_006251572.1 lncRNA downstream 198419 8217019 ~ 8232774 (-) False LOC122350139
TU91781 lncRNA downstream 213776 8210043 ~ 8217417 (-) True LOC122350139
TU91990 lncRNA upstream 50657 8507891 ~ 8508123 (-) True G62120
XR_006251637.1 lncRNA upstream 254803 8712037 ~ 8739931 (-) True LOC122350893
TU92069 lncRNA upstream 254989 8712223 ~ 8739953 (-) False LOC122350893
TU92070 lncRNA upstream 254989 8712223 ~ 8713432 (-) False LOC122350893
TU92189 lncRNA upstream 456248 8913482 ~ 8914004 (-) True G62239
XM_043247881.1 mRNA downstream 4487 8422739 ~ 8426706 (-) True tor3a
XM_043247751.1 mRNA downstream 8998 8417430 ~ 8422195 (-) True calr
XM_043246729.1 mRNA downstream 14640 8392345 ~ 8416553 (-) False eps15
XM_043246730.1 mRNA downstream 14640 8392345 ~ 8416553 (-) False eps15
XM_043246728.1 mRNA downstream 14640 8392345 ~ 8416553 (-) True eps15
XM_043247879.1 mRNA upstream 5975 8463209 ~ 8467213 (-) True LOC122351041
XM_043247880.1 mRNA upstream 5975 8463209 ~ 8466502 (-) False LOC122351041
XM_043246030.1 mRNA upstream 11808 8469042 ~ 8476547 (-) False depdc1a
XM_043246028.1 mRNA upstream 11808 8469042 ~ 8476547 (-) True depdc1a
XM_043247026.1 mRNA upstream 21447 8478681 ~ 8480731 (-) True ndufaf2
XR_006251693.1 other downstream 1419 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 1649 8429474 ~ 8429544 (-) True LOC122351131
XR_006251695.1 other downstream 1873 8429253 ~ 8429320 (-) True LOC122351132
XR_006251691.1 other downstream 2289 8428825 ~ 8428904 (-) True LOC122351128
XR_006251692.1 other downstream 3506 8427615 ~ 8427687 (-) True LOC122351129
TU92042 other upstream 190047 8647281 ~ 8649965 (-) False mrps36
TU92043 other upstream 190047 8647281 ~ 8649965 (-) True mrps36
XR_006251592.1 other upstream 195192 8652426 ~ 8657286 (-) False pola2
XR_006251623.1 other upstream 800718 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 1497516 9954750 ~ 9961701 (-) False mllt1a

Expression Profile