RNA id: XM_043247879.1


Basic Information

Item Value
RNA id XM_043247879.1
length 1861
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC122351041
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8463209 ~ 8467213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAGGAGGAGTTCTAAGACTTTGTGGCTGTTCCTGGGAACAGAACAGTTTTGGTTCACGCATACAGAGAGCATCTCACCTTAAACTCAGTTCAACATGGTCAGCCGTCTTGAACACCCAGCCGGTGgctataaaaaaatctttgaatcGTGTGAAGAGTTAGCTGAGCCCATTCCTGCTCGTGTCTCAGGCAAAATCCCTGCCTGGCTCACTGGCAGTTTGCTCCGTGTGGGCCCTGGGCTCTTTGAGATAGGAGATGAACCTTTTTACCACATTTTTGATGGCCAGGCTCTCATTCACAAGTTTGACCTGAAGGATGGACATGTCACTTATTACCGCAGATTTATCAGAACTGATGCTTATGTGAGAGCCATGACAGAGAAAAGGATTGTGATCACAGAGTTCGGTACCACTGCATATCCAGATCCATGCAAAAACATCTTTTCGAGGTTTTTTACTTACTTTCAAGGTATTGAGGTGACAGACAACTGCCTTGTCAACATCTACCCCATTGGTGAGGACTTCTATGCCTGCACGGAAACCAACTACATAACTAAAGTTGATCCTGATACCCTAGAAACAATAAAAAGGGTGGACCTTTGCAATTATCTCTCAGTCAATGGTGTGACAGCACATCCACATACTGAACCGGACGGTACTGTATATAACATTGGAAACTGCTTTGGGAAGAACATGTCATTGGCCTACAACATTATCAAGATCCCTCCACCACAAGAAGataaaTCTGATCAAATCGAGAAGTCAAAGGTTTTGGTGCAGTTTCCAAGCAGTGAGAGATTCAAACCATCCTACGTTCATAGttttggcatgACAGAGAACTACTTTGTGTTTGTTGAGACTCCAGTGAAGATCAATCTGCTGAAATTTCTGACTTCCTGGAGTGTCAGAGGGACAAATTACATGGACTGCTTTGAGTCAAATGACAAAATGGGTACATGGTTTCATCTGGCAACCAAAAATCCTGGAGAATACATTGGCCACAAATTCAGGACATCTgcttttaatcttttccatCACATTAACTGTTACGAGGACCAAGGCTTTATTGTTGTCGACCTTTGCACTTGGAAGGGGTATGATTTTGTGTATAATTATCTGTATTTGGCAAACATGAGGCAAAACTGGGAGGAAGTCAAAAAAGCAGCCATGAGAGCTCCACAGCCAGAGGTGCGACGATATGTGCTTCCACTTGACATTCACAGGGAAGAGCAGGGAAAGAATTTGGTTTCACTTTCATACTCCACAGCCACTGCTGTCATGTGCAGTGATGGAACCGTTTGGCTTGAACCCGAGGTTCTTTTCTCTGGACCGCGTCAAGcttTTGAGTTTCCTCAGATCAACTACAAAAAATACTGTGGGAAAAATTACACCTTCGCTTATGGACTTGGGCTAAACCACTTCGTTCCAGACCGGATTTGCAAGTTGAATGTGAAAAGCAAAGAAACATGGATATGGCAGGAGCCAGATGCCTATCCGTCCGAGCCACTGTTTGTGCAAAGCCCTGATGctaaagatgaagatgaaggagtTCTTCTGAGCATTGTAGTGAAACCAGGAGTCAGCCAGAGGCCAGCGTTCCTCCTCATACTCAATGCCACTGACCTGACAGAAATAGCACGTGCAGAGGTTGATATCATGATTCCTGTCACTCTCCACGGCATGTACAAACCTTAAACGACCAAAATCACGACTTTGTTTTTCAGCacgtagatttttttttttatgtatacagtGTTATTGTTGCCATTTTAAATGGGTCAGTTATATGACCTGATATGCTTGTAACACAACAGCTTTTGGATAATCATGTACAataagaaataaactttttacttCAGCA

Function

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0050251 retinol isomerase activity molecular_function

KEGG:

id description
K11158 RPE65; retinoid isomerohydrolase / lutein isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91913 lncRNA downstream 33074 8427285 ~ 8430135 (-) True G62076
XR_006251686.1 lncRNA downstream 193992 8253538 ~ 8269217 (-) True LOC122351107
XR_006251685.1 lncRNA downstream 193992 8255469 ~ 8269217 (-) False LOC122351107
XR_006251572.1 lncRNA downstream 230435 8217019 ~ 8232774 (-) False LOC122350139
TU91781 lncRNA downstream 245792 8210043 ~ 8217417 (-) True LOC122350139
TU91990 lncRNA upstream 40678 8507891 ~ 8508123 (-) True G62120
XR_006251637.1 lncRNA upstream 244824 8712037 ~ 8739931 (-) True LOC122350893
TU92069 lncRNA upstream 245010 8712223 ~ 8739953 (-) False LOC122350893
TU92070 lncRNA upstream 245010 8712223 ~ 8713432 (-) False LOC122350893
TU92189 lncRNA upstream 446269 8913482 ~ 8914004 (-) True G62239
XM_043247873.1 mRNA downstream 5975 8431193 ~ 8457234 (-) False osbpl9
XM_043247872.1 mRNA downstream 5975 8431193 ~ 8457234 (-) False osbpl9
XM_043247871.1 mRNA downstream 5975 8431193 ~ 8457234 (-) True osbpl9
XM_043247875.1 mRNA downstream 13439 8431193 ~ 8449770 (-) False osbpl9
XM_043247874.1 mRNA downstream 15738 8431193 ~ 8447471 (-) False osbpl9
XM_043246030.1 mRNA upstream 1829 8469042 ~ 8476547 (-) False depdc1a
XM_043246028.1 mRNA upstream 1829 8469042 ~ 8476547 (-) True depdc1a
XM_043247026.1 mRNA upstream 11468 8478681 ~ 8480731 (-) True ndufaf2
XM_043247251.1 mRNA upstream 133782 8600995 ~ 8606166 (-) True rab3c
XM_043246677.1 mRNA upstream 180057 8647270 ~ 8649983 (-) False mrps36
XR_006251693.1 other downstream 33435 8429694 ~ 8429774 (-) True LOC122351130
XR_006251694.1 other downstream 33665 8429474 ~ 8429544 (-) True LOC122351131
XR_006251695.1 other downstream 33889 8429253 ~ 8429320 (-) True LOC122351132
XR_006251691.1 other downstream 34305 8428825 ~ 8428904 (-) True LOC122351128
XR_006251692.1 other downstream 35522 8427615 ~ 8427687 (-) True LOC122351129
TU92042 other upstream 180068 8647281 ~ 8649965 (-) False mrps36
TU92043 other upstream 180068 8647281 ~ 8649965 (-) True mrps36
XR_006251592.1 other upstream 185213 8652426 ~ 8657286 (-) False pola2
XR_006251623.1 other upstream 790739 9257952 ~ 9262826 (-) False mindy4
TU92748 other upstream 1487537 9954750 ~ 9961701 (-) False mllt1a

Expression Profile