RNA id: XM_043247902.1


Basic Information

Item Value
RNA id XM_043247902.1
length 1620
RNA type mRNA
GC content 0.49
exon number 8
gene id plin3
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9521721 ~ 9526061 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCAAGTTCTTGACTCACAGGCTCTTACAGACTCAGCATTAGAGATTCACACGTCTACTGAACGCGGGTCAGCGAAGGACAGCGGATCAATAACAGAATGGCAGATAACGGGAAGACAGTCGAGAAGGACACAGAGGCATCACATGCTACTCAGGAACAACAGAGTGTGGTATCCAGAATGAGCAACCTGCCGCTGGTGAGTTCAGCTTGTGGTGCGATGTATAATGCATACAGCTCTACTAAAGACAGCGTGCCGCTCCTGAAAGGAGTAATGGAGGTTGCGGAGAGCGGGGTGCGCACACTAGGTGCTGCTGCTTCAACTGGTTCCAAACCCATACTAGACCGTCTGGAACCTCAAATTGCGGCGGTAAATGAATATGCCATTAAAGGGCTGGAGAAGGTAGAAGAAAACCTTCCAATTTTACAACAACCAGCAGACAAGCTGGTATCCAACACAGTGGGCATGGTGTACCAGTCAGTAACAGGAGCAAAGGATGCTGTGGTGGGGGCTGTGCTGGGTGGTGTGGAAAAGACACGTATGGCCGTGGCCGGTGGCATAAACACTGTTATGGGAACCCGTGTGGGCCAGATGGTCAGTAATGGTGTAGACAAGGCCCTCACCCAATCTGAAGACTGGGTAGATCAGAACCTTCCAATCAGTGAAAAGGAGCTTGCTGCACTGGCTGAACCAAGACCAGGTGAGGAGGAAGGATTCGTAGTAACTGCTAGACCCAGCTATTTTGTCCGCCTTGGTAAACTGTCTGCCAAAGTTCAGGAGAGGGCACTTGAGCAGTCTCTCATCAGGGCCCGCAGAGCCAGAGACACTACGCATGCAGCTGTAACTCAAATGACCAGCACTATGGACCTGCTGGAAAGTGCCCGGGTTACCTTGGCCAGTGCCAACCAGCAGCTAGGAGGTGCTCCGGAGCAGTTACTGCAGAGATGGAAAGAATGGAAAGAAGGGCAGCCCAAAGAACTGCAGGAGAAAGTAACAGCCGAGACAGCGGTGGATACAGCAAAAGACAAGAAAGAGGAGCTGGAGTCGAGAGCCCTGTCGATGGTTCAGGGTTTGAGTAATCAGCTCAAGGCGGCATGTTCAGGGGTCGTGTCCAGCGTACAGGGTCTCCCGGGCACTGTGCAGGAACAGCTTCTAAATGCTCGACATACAGCTGGAGAACTCCAGGCATCACTGAGCAGCACCAAAATACTCACGCCCATTCTCTTAGAGCAGACACGACAGCAGATCGGCCAGGTACGACAATCTTTGGATGGAGTCGTGGATTACCTTCTCAATAACACTCCTCTCAATTGGCTGGTTGGGCCTTTTGCACCACAGATAACAGAGAAAGGCGATTGAAAACGCTGTACAATTTAAAACTGATGTTTTGTTGCAGTAGGTTAATATATAGTCCAAATTGTTGTATCTTGCAACTATtcccattttaaaaatgtaactagtGGTAATTGAAGTCTGTAGATTCACGCTATCATTTCATCAATGTCAGTATTCTAAACCAAGCAGGTAGCGTGGTGATATAATGCGGTGtagcattcaaaagtttgtggtaCTTAAATACTCAATACATGTACtttctaaataaaagcaaatcatGCATAA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92550 lncRNA downstream 107282 9408414 ~ 9414439 (-) True G62519
TU92551 lncRNA downstream 107282 9408414 ~ 9414439 (-) False G62519
TU92265 lncRNA downstream 436527 9082795 ~ 9085194 (-) True G62293
TU92203 lncRNA downstream 483021 9030865 ~ 9038700 (-) True G62250
TU92557 lncRNA upstream 566 9526627 ~ 9526966 (-) True G62525
TU92615 lncRNA upstream 176898 9702959 ~ 9703191 (-) True G62564
TU92616 lncRNA upstream 177315 9703376 ~ 9703598 (-) True G62565
TU92617 lncRNA upstream 181712 9707773 ~ 9708194 (-) False fam78bb
TU92618 lncRNA upstream 182912 9708973 ~ 9709221 (-) True G62567
XM_043247431.1 mRNA downstream 968 9513951 ~ 9520753 (-) True zgc:77486
XM_043247299.1 mRNA downstream 10086 9504012 ~ 9511635 (-) True abhd17ab
XM_043246892.1 mRNA downstream 31053 9378491 ~ 9490668 (-) True sema6bb
XM_043246992.1 mRNA upstream 2905 9528966 ~ 9552304 (-) True rgl1
XM_043246993.1 mRNA upstream 2905 9528966 ~ 9542534 (-) False rgl1
XM_043246179.1 mRNA upstream 36033 9562094 ~ 9579853 (-) False colgalt2b
XM_043246178.1 mRNA upstream 36033 9562094 ~ 9578017 (-) True colgalt2b
XM_043247809.1 mRNA upstream 55767 9581828 ~ 9605966 (-) True zgc:92140
XR_006251623.1 other downstream 258895 9257952 ~ 9262826 (-) False mindy4
XR_006251592.1 other downstream 864435 8652426 ~ 8657286 (-) False pola2
TU92042 other downstream 871756 8647281 ~ 8649965 (-) False mrps36
TU92043 other downstream 871756 8647281 ~ 8649965 (-) True mrps36
XR_006251693.1 other downstream 1091947 8429694 ~ 8429774 (-) True LOC122351130
TU92748 other upstream 428689 9954750 ~ 9961701 (-) False mllt1a
TU92747 other upstream 435736 9961797 ~ 9969485 (-) False mllt1a
TU92903 other upstream 863122 10389183 ~ 10392043 (-) True G62760
TU92984 other upstream 914703 10440764 ~ 10478685 (-) False G62826
unassigned_transcript_1293 other upstream 1014158 10540219 ~ 10540291 (-) True trnar-ccg_26

Expression Profile