RNA id: TU186500


Basic Information

Item Value
RNA id TU186500
length 2204
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G137831
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1916147 ~ 1918411 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGAAGCTCCCCAGATGAGATGATTTCAGCTCCAGCAGGGCTTCAGAGaatcggaggaggaggagggtgttattattattattagtctgtgtctctgtgACTCTGGGTTGGGAAGCTGATGGAAGTTTGGAAAGGTTTCTGAATCTCTCCTCTAAAAGAAGTGTTTGTGGACTCTGCACGGAGGTGGAGAAGATAAAGGCCGGATTGCACCGAGACGAGGAAAAGGCAAACACGGCTGAGACTGACAGCTTCAGCCCGGAGCTGTCAGCGGAGACGGAGAGCTGACTGAAAGATTCTTCACACCTCTCGACTTCTCGTGCAATTTCGCCGAGACTGACGGAGGAGGATGAACTCCAAAAAGCCAGAGCGCTCCAGATGCGGCTGAGGTGCATCAGACAAGAAACGAGGCGGATTACTGATGCGTTTTGAACAGTCTGTGAGGCGTGTTGCTGCAACACTGACTGTGGTAATTGCGAGCAGGGGCTGATCACCAGATTATTGATCAGTCGGTTGTCGCATTTTGAGCGGAATTTTAATTCCAGAAAGGACGGAAAGCAGACTTTAAACCAGGTTTTTTTTAGCTGCTCTTGACAAATTCCAGACATAGACGACGTAGACGATGCAGACGATGCAGATGAGCAGATGTGATGGATCATCGGACGCATCATCCTCCCTCGTGACTGTGGAGTCTGTGGAGAGAGAGGTTATTATGTCTAATCCTCATCACTCATCACTCGTGCAGCGTGTCTGCAGGAGCGTCTGCTGGAGaacgaaacaaacaaaaaaaaaagcctctgGTTAAAGTCTAGGAaaagaagagataaaaaaagagacagaaagccaaagaaagaaagaaagagagagagagagagaaagttgtTATAAAGAGAATCTGATGGTTTAGTAAGATGTGAAGATATGAGAGCGTGTTTGAGAGAACGTCAGTGTAAAAGCTTCTGACTAAAGAAATGCAAGACGGAGGGCTTTAATGTtaatgaaaggaaaaaagaaaatggaatTCCTGAGAGGTGACGTGAGTGTGAgaattttaaagtgtgtgttagaatgagacaaaataaaaaagctttagacacttttaaaaagaacaagaacacTCCACAGGTGtgaataggaaaaaaatatacaataaactaCAAATTTAAAGGGGAATTTTAGAATACAGAATGGAAGCAGGGGTCAGTTTTCATATATAGccaatattatatttactgtccAAACCCtttttgagagttcagaaatcaatatttggtggaataaccctggttgggttttaatcacagtttttttcatgcatcttggcatcatgttgttttcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaagtcaagcagtttatatatcttcctcttgattatatttcggaggttttcaatttggttaaatcaaagaaaatcatcatttttaagtgctctcttaatttgtttaaaGCTGTATAtacctgtttaaatatatatatatataaagaaatacaaaaataaacaccaAAGTCCCACAATCTGGCAGGGCACAGCAGTGCTCTTACACATAGGGGGGAAAGAAACACCAAAATAGGCCAAATCtaacagtttatatatttaaatctaGTTAATCTAGAATCACCATAATATTCTGATGATGTCTGATGCTTTACATACCAAtttataaaccaaaaaaatgctttttatttttttggggtcactaaaattactcaaatgtatttaaaaacattttagctaAATAACTCAGTAATGAAGAAAATGATGTTCATAAATTTTATAGTAATAAATGAAGCCACAACATTTTCTTCCCAGTATCAGAGGGAAATGACTAATGACTAATAGCCTGTACTGCTGGTGCTCAGATTTGATCCTCTATTACAGAACCAGTACTGTAGGTTTGCattgagtttttgagtttttttttttgttttgtttttttgggaggGAAAAACACAATTGTCTGTACTgctcgtttgtttgtttgtttgtttgttggtatGTTTTTTAGCGAATGTACAGAATCTTGTCATTTCCATCCACTGTTTACAGCCACTCTCTCATTTTTAATACAGTCACACTAATGTTCACTATTCAGATTCAGAAATGCCATAGCTATTtgattaattctttttttttatttctattattct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186581 lncRNA upstream 36755 1879072 ~ 1879392 (+) True G137898
TU186570 lncRNA upstream 106535 1808205 ~ 1809612 (+) True G137889
TU186572 lncRNA upstream 109967 1804927 ~ 1806180 (+) True G137890
TU186493 lncRNA upstream 145957 1762038 ~ 1770190 (+) True G137827
TU186495 lncRNA upstream 148711 1762038 ~ 1767436 (+) False G137827
TU186585 lncRNA downstream 3142 1921553 ~ 1924855 (+) True G137902
TU186605 lncRNA downstream 69403 1987814 ~ 1988466 (+) True G137917
TU186621 lncRNA downstream 106782 2025193 ~ 2028808 (+) True G137930
TU186635 lncRNA downstream 288956 2207367 ~ 2237690 (+) False G137943
TU186636 lncRNA downstream 315138 2233549 ~ 2237690 (+) True G137943
XM_007229162.3 mRNA upstream 1128 1869474 ~ 1915019 (+) True LOC103042278
XM_007229163.3 mRNA upstream 55632 1855297 ~ 1860515 (+) True kdsr
XM_022677685.1 mRNA upstream 64834 1835502 ~ 1851313 (+) True LOC103042893
XM_022677778.1 mRNA upstream 98935 1810725 ~ 1817212 (+) True LOC103043726
XM_022677773.1 mRNA upstream 113828 1777225 ~ 1802319 (+) True tsc22d2
XM_022677781.1 mRNA downstream 183810 2102221 ~ 2230065 (+) False dpp6
XM_022677782.1 mRNA downstream 198925 2117336 ~ 2230065 (+) False dpp6
XM_022677780.1 mRNA downstream 207955 2126366 ~ 2230065 (+) True dpp6
XM_022677783.1 mRNA downstream 245464 2163875 ~ 2230065 (+) False dpp6
XM_022677788.1 mRNA downstream 403627 2322038 ~ 2362870 (+) True LOC103042593
TU186579 other upstream 77630 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 277892 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 416191 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 876221 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 927509 980980 ~ 988638 (+) True G137756
TU186618 other downstream 104344 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 1883442 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 1914844 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 1914844 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 2177605 4096016 ~ 4102214 (+) False LOC111194271

Expression Profile