RNA id: TU186509


Basic Information

Item Value
RNA id TU186509
length 1847
lncRNA type sense_over
GC content 0.39
exon number 3
gene id G137839
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1351274 ~ 1455746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcattaaaaaaaaaaactgtgattaaaaaacagggttattccaccaaatattgatttctgaactcttaaaactttgaatatgaacttgttttatttgcattatttgagctctgaaagctctgcatctttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtgctttcttaattgttttcccAGAGCTGAATATTAGAGACATTTGGTGCTTATAGGTTGTTTTATGTTAAGCCTTATATTTTTATGGAATAGAAAACTGAACGTGAGGATTGTGACGTGAGCAGTGAGCGATTTGCTGTTTCTAGGTTCTAGTTTTAGctcattaaaagcattttttttgttttaaagctttttttcttctacATTTCTGTAGGAAATTCACAGGTTTACAGGATTCACTAATTCATCTTTCGGGCAACAGAAAGTGCACACACCTACCGAGTGATACACAGCTCGctgttttagtacattaattATAGCACAtaaaatttacataaaatgtaaaatatcacATGTCAGAACGGCCCCGCCCATCAATCACAATCACCTCGGTGAAACAGAAAAGAAGGGAACAGGTGAAGAATGAAGAGTGGTATGGTGTGATCACAcaggaaacaaaaaaattataaaacaaagaaaaaaaaaatcgtaaaaagaaaaactgtacaaaacattTGCAGAGTTCAAAGAGTTCTCCGACTTCTATagaaccaacacaacacaatacaatactgtCCAACTGGGAATGGGTCacaatttttctttctttcctcctgAAGGCATTTTATACTGGCTTTAGTGATCCATCATCTCCGGCTCGGGAGTCGAGATCTTCATTTACGCCACtttacaggggttagacaatgaaactgaaacacctggttttagagcacaatataacagtaattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacactgaattctgcgtgatttgatcagccgtggttttatggagttttttggatacaatccgtgtTAGCATCCCtttgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctctttgaactctggtatgtctcccataatgccataatgttgtgtgcattgcaatatttagagcagaactgtgctaaaggctcttaccctgctaattgaaccttcacactctgctcttactggtgcaatcaGGCtgttccaatttagccatgaaacctaaaatcccacactaaaatgatgacaggtgtttcagtttcattgtccaaccgctGTATTTCTGGAATCTTCTTCTCACTTTCTTTACTTACTTTGCAGAATTTGCAGAATTTAAAGACCACCACCCCTTTCTCTTTACTGGTAAACACCCACACTGTGGATATGCGTGGGGAAAAGTGCGAGTGCACGTCTCAGAGAGTTTTCTGATGTCCGTTGGCGGCGAGTTTTCCCGACTCCGGCTCCGTGGGGCTGTTTGACAGGTTCAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186427 lncRNA upstream 124757 1101388 ~ 1226517 (+) True G137782
TU186389 lncRNA upstream 339279 906454 ~ 1011995 (+) True G137754
XR_452701.2 lncRNA upstream 365120 980933 ~ 986154 (+) True LOC103021626
TU186362 lncRNA upstream 600864 749841 ~ 750410 (+) True G137737
TU186354 lncRNA upstream 696825 654221 ~ 654449 (+) True G137729
TU186489 lncRNA downstream 36070 1491816 ~ 1499956 (+) True G137826
TU186491 lncRNA downstream 36070 1491816 ~ 1499956 (+) False G137826
TU186528 lncRNA downstream 52519 1508265 ~ 1509483 (+) False G137856
TU186527 lncRNA downstream 52530 1508276 ~ 1509554 (+) True G137856
TU186529 lncRNA downstream 53907 1509653 ~ 1512939 (+) False G137857
XM_022677759.1 mRNA upstream 16081 1300585 ~ 1335193 (+) True rbm33
XM_007229176.3 mRNA upstream 105505 1241235 ~ 1245769 (+) True LOC103046777
XM_022677758.1 mRNA upstream 127445 1217510 ~ 1223829 (+) True insig1
XM_007229188.3 mRNA upstream 184855 1128077 ~ 1166419 (+) True htr5a
XM_022677757.1 mRNA upstream 261763 1084808 ~ 1089511 (+) True LOC103047078
XM_022677661.1 mRNA downstream 33559 1489305 ~ 1491307 (+) False LOC111194186
XM_022677660.1 mRNA downstream 33566 1489312 ~ 1491340 (+) True LOC111194186
XM_022677766.1 mRNA downstream 109184 1564930 ~ 1594076 (+) True cdc73
XM_022677768.1 mRNA downstream 228647 1684393 ~ 1692239 (+) True LOC103022771
XM_022677770.1 mRNA downstream 267789 1723535 ~ 1735903 (+) True LOC103022156
TU186409 other upstream 311348 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 362636 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 570078 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 1256701 93285 ~ 94573 (+) True G137614
TU186490 other downstream 41553 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 171209 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 379731 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 567009 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 2346107 3801853 ~ 3815437 (+) False LOC103047488

Expression Profile