RNA id: TU186561


Basic Information

Item Value
RNA id TU186561
length 213
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G137880
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1720742 ~ 1720954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCTGATGAAGCTTCTGTAGATGTATTTAGTGAATCTCCTCCCCCGCGCGCCCCCAAACTCAGCTTTAAAAGCAGGATTCTCCTAAAAATCAGCAGAAACGACAACAACAAACCCCGCCGCAGCTCCGCCGCCCACGCCGCCTCCGCACCACCCAACAAGACGCCCTGTGATTGGCTGccttcttttttattctctgttattttaataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650978.1 lncRNA upstream 84077 1633487 ~ 1636665 (+) True LOC111194188
TU186507 lncRNA upstream 183461 1532189 ~ 1537281 (+) True G137837
TU186503 lncRNA upstream 188819 1524712 ~ 1531923 (+) True G137833
TU186536 lncRNA upstream 202814 1516479 ~ 1517928 (+) True G137858
TU186532 lncRNA upstream 207803 1509653 ~ 1512939 (+) False G137857
TU186493 lncRNA downstream 41084 1762038 ~ 1770190 (+) True G137827
TU186495 lncRNA downstream 41084 1762038 ~ 1767436 (+) False G137827
TU186572 lncRNA downstream 83973 1804927 ~ 1806180 (+) True G137890
TU186570 lncRNA downstream 87251 1808205 ~ 1809612 (+) True G137889
TU186581 lncRNA downstream 158118 1879072 ~ 1879392 (+) True G137898
XM_022677768.1 mRNA upstream 28503 1684393 ~ 1692239 (+) True LOC103022771
XM_022677766.1 mRNA upstream 126666 1564930 ~ 1594076 (+) True cdc73
XM_022677660.1 mRNA upstream 229402 1489312 ~ 1491340 (+) True LOC111194186
XM_022677661.1 mRNA upstream 229435 1489305 ~ 1491307 (+) False LOC111194186
XM_022677760.1 mRNA upstream 271715 1436940 ~ 1449027 (+) True rnf32
XM_022677770.1 mRNA downstream 2581 1723535 ~ 1735903 (+) True LOC103022156
XM_022677771.1 mRNA downstream 19217 1740171 ~ 1746238 (+) True LOC111194259
XM_022677773.1 mRNA downstream 56271 1777225 ~ 1802319 (+) True tsc22d2
XM_022677776.1 mRNA downstream 56273 1777227 ~ 1802319 (+) False tsc22d2
XM_022677778.1 mRNA downstream 89771 1810725 ~ 1817212 (+) True LOC103043726
XR_002650979.1 other upstream 82487 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 220786 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 680816 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 732104 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 939546 762716 ~ 781196 (+) False rfwd2
TU186579 other downstream 114523 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 301801 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 2080899 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 2112301 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 2112301 3833255 ~ 3834460 (+) False G138701

Expression Profile