RNA id: XM_022677685.1


Basic Information

Item Value
RNA id XM_022677685.1
length 2030
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC103042893
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1835477 ~ 1851313 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCCCAACTCcagcagcagaaacagaaacagacgGAATGAAAGCGAGTCATGGAGCTGTGTCTGAGCTGAGCTCACAGCAGCAGATTTCCTGAGATCCGGACATTCAGATGGAGCCGACCAACCTACAGAAAGCCATAGCAGTGGCCACCAAAGCTTCACAAGAAGATCAAGCTGGAAACTATGAGGAGGCCATCAAATCCTACCAGCACGCCGTGAAGTATTTTCTGCACATAATAAAGCGTGAGCCACAGGGAAAAGAAGGCAATCAGAAGCTCAGGGAGAAGTGTGTCCAGTACCTGGACCGGGTGGAGGAGCTTCAGGATTATCTGGATAAAAAACAGAAAGCTATAGACCTTGCCAGTAAGGCAGCCCAGGAGGACAAGGCCCAGAACTACGAGGAGGCCCTGCGACTCTACCAGCATGCAGTTCAGTACTTCCTACATGTGGTGAAATATGAAGCTCAGGGGGACAAAGCAAAACAGAGCATCAGAGCCAAGTGTGCAGAGTATCTGGACCGAGCGGAGAAACTGAAGGAGTATCtaaagaagaaggagaaagcCCCTGCAAAACCTGTGAAGGAGTCCCAGTCAGACGATAAAGGaaATGAGAGTGATGAAGGAGAAGATCCAGAGAAGAAGAAATTTCAGAATCAGCTCTCCGGGGCCATCGTCATGGAGAAGCCAAACATTCAGTGGAATGACGTTGCTGGGCTGGAGGGAGCTAAAGAGGCACTGAAGGAAGCTGTAATTTTACCCATCAAATTCCCACATCTCTTCACAGGTAAAAGAACTCCATGGAGGGGGATTCTGCTCTTCGGACCTCCAGGCACAGGAAAGTCTTATCTGGCCAAAGCCGTAGCCACAGAGGCCAACAACTCCACCTTTTTCTCAATTTCCTCCTCAGACTTAGTGTCCAAGTGGCTGGGAGAAAGCGAGAAgcTGGTAAAGAACTTGTTTACTCTGGCCAGAGAGAACAACCCCTCCATCATCTTCATCGACGAGATCGACTCCCTGTGTGGCTCTCGAAGTGAGAACGAGAGCGAGGCGGCTCGGAGGATCAAGACAGAGTTCCTTGTGCAGATGCAGGGTGAGGAAACGTTCCAGGTTACTGGTCCTTTTAGTAACAGGGATAAATTGTCACTgcTGGTAAAGAACTTGTTTACTCTGGCCAGAGAGAACAACCCCTCCATCATCTTCATCGACGAGATCGACTCCCTGTGTGGCTCTCGAAGTGAGAACGAGAGCGAGGCGGCTCGGAGGATCAAGACAGAGTTCCTTGTGCAGATGCAGGGTGAGGAAACGTTCCAGGTTACTGGTCCTTTTAGTAACAGGGATAAATTGttttttttttgcagatttgaGAAGCGCATCTACATCCCCCTCCCGGAGGAGCACGCTCGTTCCTTCATGTTTAAGCTGCACCTGGGCAGCACACCCAACAGCCTCACAGAAGCAGACTTCAACACTCTGGGGAAGAAGACTGAGGGCTACTCAGGAGCCGATATCAGCATTATAGTGAGAGACGCACTGATGCAGCCAGTCAGGAAGGTTCAGTCTGCTACACACTTTAAACAGGTACGAGGCCCATCAAGAGATGATCCGAACCTCATTCTGGATGATCTTTTGACCCCTTGTTCTCCAGGTGATCCGAACGCCGTAGAGATGACTTGGATGGAGGTTCCTGGGGATAAGCTCTTGGAGCCTGTGGTTAGCATGCCGGATATGTTACGATCACTATCCAACACAAAGCCCACCGTGAACGAGCAGGACCTGGAGAAGCTACGGAAGTTCACTGAGGACTTCGGCCAGGAAGGCTGAGAGGGAGGCGTCTCTTCCAGAACCAAAGCAAACACAACCTGATTGTAAAGTCttcttctgtttcttgttttttctccccccccccccctctttccTCCTCCTGGACTTTTTTCCCTTCGGCTGGTGGCTGAGCAGACGGCAGGTTTAAGCTGGTCTGGACGCTACATGGGAACCTGATGAgtgtgttcattcattcattcattcattcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186570 lncRNA upstream 25890 1808205 ~ 1809612 (+) True G137889
TU186572 lncRNA upstream 29322 1804927 ~ 1806180 (+) True G137890
TU186493 lncRNA upstream 65312 1762038 ~ 1770190 (+) True G137827
TU186495 lncRNA upstream 68066 1762038 ~ 1767436 (+) False G137827
TU186561 lncRNA upstream 114548 1720742 ~ 1720954 (+) True G137880
TU186581 lncRNA downstream 27759 1879072 ~ 1879392 (+) True G137898
TU186500 lncRNA downstream 64834 1916147 ~ 1918411 (+) False G137831
TU186501 lncRNA downstream 64834 1916147 ~ 1918411 (+) True G137831
TU186585 lncRNA downstream 70240 1921553 ~ 1924855 (+) True G137902
TU186605 lncRNA downstream 136501 1987814 ~ 1988466 (+) True G137917
XM_022677778.1 mRNA upstream 18290 1810725 ~ 1817212 (+) True LOC103043726
XM_022677773.1 mRNA upstream 33183 1777225 ~ 1802319 (+) True tsc22d2
XM_022677776.1 mRNA upstream 33183 1777227 ~ 1802319 (+) False tsc22d2
XM_022677771.1 mRNA upstream 89264 1740171 ~ 1746238 (+) True LOC111194259
XM_022677770.1 mRNA upstream 99599 1723535 ~ 1735903 (+) True LOC103022156
XM_007229163.3 mRNA downstream 3984 1855297 ~ 1860515 (+) True kdsr
XM_007229162.3 mRNA downstream 18161 1869474 ~ 1915019 (+) True LOC103042278
XM_022677781.1 mRNA downstream 250908 2102221 ~ 2230065 (+) False dpp6
XM_022677782.1 mRNA downstream 266023 2117336 ~ 2230065 (+) False dpp6
XM_022677780.1 mRNA downstream 275053 2126366 ~ 2230065 (+) True dpp6
XR_002650979.1 other upstream 197247 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 335546 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 795576 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 846864 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 1054306 762716 ~ 781196 (+) False rfwd2
TU186618 other downstream 171442 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 1950540 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 1981942 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 1981942 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 2244703 4096016 ~ 4102214 (+) False LOC111194271

Expression Profile