RNA id: TU187656


Basic Information

Item Value
RNA id TU187656
length 215
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G138663
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3669362 ~ 3669576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatgaaactgaaacaccaggttttagagcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgagatgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187654 lncRNA upstream 5354 3663776 ~ 3664008 (+) True G138661
TU187651 lncRNA upstream 57960 3611193 ~ 3611402 (+) True G138658
TU187628 lncRNA upstream 67169 3601855 ~ 3602193 (+) True G138647
TU187623 lncRNA upstream 85072 3584018 ~ 3584290 (+) True G138642
TU187578 lncRNA upstream 143054 3524631 ~ 3526308 (+) True G138609
TU187658 lncRNA downstream 12150 3681726 ~ 3681930 (+) True G138665
TU187666 lncRNA downstream 51362 3720938 ~ 3753410 (+) True G138671
TU187668 lncRNA downstream 62454 3732030 ~ 3733460 (+) True G138672
TU187754 lncRNA downstream 211975 3881551 ~ 3907123 (+) True G138731
TU187772 lncRNA downstream 366795 4036371 ~ 4039858 (+) True G138744
XM_007250674.3 mRNA upstream 70760 3585149 ~ 3598602 (+) True LOC103030773
XM_007250671.2 mRNA upstream 88236 3571143 ~ 3581126 (+) True LOC103030036
XM_022677693.1 mRNA downstream 135211 3804787 ~ 3839372 (+) True LOC103047488
XM_022677694.1 mRNA downstream 231578 3901154 ~ 3942480 (+) True LOC103031935
XM_022677843.1 mRNA downstream 326366 3995942 ~ 4002916 (+) True LOC103021527
XM_007250680.3 mRNA downstream 352860 4022436 ~ 4046639 (+) True LOC103032574
XM_022677844.1 mRNA downstream 383154 4052730 ~ 4065474 (+) True LOC103033521
TU186618 other upstream 1644976 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 1830845 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 2031107 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 2169406 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 2629436 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 132277 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 163679 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 163679 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 426440 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 496466 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile