RNA id: TU187668



Basic Information


Item Value
RNA id TU187668
length 299
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G138672
representative True

Chromosome Information


Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3732030 ~ 3733460 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TCTGCTTTATCAGCCTCTTATCCGCCACGATGACGTTCTCCGCGTCCACCACGATCACCTTCCCGTCTCGAGGCCCCACGGCGAAGTTATCGAAGCTGACGTCCAGCAGGTACAGGGCGAAGTCGAAGTCGTTGTTGGTGAGCTGCTCGGCGATGTCCATCAGCTGCTTGGCCAGATCCACTCTCTTCTCCCACGGTGCGTTATAGAAGCTCCACAGCTCCTCACCAACATAGTTCACCGCCACCATGCGCCCGCACGCACCCAGGTACTTCGCAAACGGCCAGCCCTCGTCTGAGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU187658 lncRNA upstream 50100 3681726 ~ 3681930 (+) True G138665
TU187656 lncRNA upstream 62454 3669362 ~ 3669576 (+) True G138663
TU187654 lncRNA upstream 68022 3663776 ~ 3664008 (+) True G138661
TU187651 lncRNA upstream 120628 3611193 ~ 3611402 (+) True G138658
TU187628 lncRNA upstream 129837 3601855 ~ 3602193 (+) True G138647
TU187754 lncRNA downstream 148091 3881551 ~ 3907123 (+) True G138731
TU187772 lncRNA downstream 302911 4036371 ~ 4039858 (+) True G138744
TU187781 lncRNA downstream 335327 4068787 ~ 4072088 (+) True G138747
XR_002651006.1 lncRNA downstream 362537 4095997 ~ 4102241 (+) True LOC111194271
TU187795 lncRNA downstream 371520 4104980 ~ 4114118 (+) True G138758
XM_007250674.3 mRNA upstream 133428 3585149 ~ 3598602 (+) True LOC103030773
XM_007250671.2 mRNA upstream 150904 3571143 ~ 3581126 (+) True LOC103030036
XM_022677693.1 mRNA downstream 71327 3804787 ~ 3839372 (+) True LOC103047488
XM_022677694.1 mRNA downstream 167694 3901154 ~ 3942480 (+) True LOC103031935
XM_022677843.1 mRNA downstream 262482 3995942 ~ 4002916 (+) True LOC103021527
XM_007250680.3 mRNA downstream 288976 4022436 ~ 4046639 (+) True LOC103032574
XM_022677844.1 mRNA downstream 319270 4052730 ~ 4065474 (+) True LOC103033521
TU186618 other upstream 1707644 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 1893513 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 2093775 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 2232074 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 2692104 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 68393 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 99795 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 99795 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 362556 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 432582 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile