RNA id: TU187772


Basic Information

Item Value
RNA id TU187772
length 627
lncRNA type intronic
GC content 0.49
exon number 3
gene id G138744
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4036371 ~ 4039858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctagcaaccacttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaacaacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatatgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctacaaccacttagcaactgcctagcaaccaccctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcagctgcctagcaaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187754 lncRNA upstream 129248 3881551 ~ 3907123 (+) True G138731
TU187666 lncRNA upstream 282961 3720938 ~ 3753410 (+) True G138671
TU187668 lncRNA upstream 302911 3732030 ~ 3733460 (+) True G138672
TU187658 lncRNA upstream 354441 3681726 ~ 3681930 (+) True G138665
TU187656 lncRNA upstream 366795 3669362 ~ 3669576 (+) True G138663
TU187781 lncRNA downstream 28929 4068787 ~ 4072088 (+) True G138747
XR_002651006.1 lncRNA downstream 56139 4095997 ~ 4102241 (+) True LOC111194271
TU187795 lncRNA downstream 65122 4104980 ~ 4114118 (+) True G138758
TU187782 lncRNA downstream 132913 4172771 ~ 4175585 (+) True G138748
TU187942 lncRNA downstream 196811 4236669 ~ 4237527 (+) True G138840
XM_022677843.1 mRNA upstream 33455 3995942 ~ 4002916 (+) True LOC103021527
XM_022677694.1 mRNA upstream 93891 3901154 ~ 3942480 (+) True LOC103031935
XM_022677693.1 mRNA upstream 196999 3804787 ~ 3839372 (+) True LOC103047488
XM_007250674.3 mRNA upstream 437769 3585149 ~ 3598602 (+) True LOC103030773
XM_015606179.2 mRNA upstream 455245 3571143 ~ 3581126 (+) False LOC103030036
XM_022677844.1 mRNA downstream 12872 4052730 ~ 4065474 (+) True LOC103033521
XM_022677845.1 mRNA downstream 20744 4060602 ~ 4065474 (+) False LOC103033521
XM_007250681.3 mRNA downstream 35630 4075488 ~ 4080104 (+) True dcun1d1
XM_022677846.1 mRNA downstream 41154 4081012 ~ 4095442 (+) True ccdc39
XM_022677854.1 mRNA downstream 102238 4142096 ~ 4154519 (+) False LOC103022774
TU187722 other upstream 201911 3833255 ~ 3834460 (+) True G138701
TU187723 other upstream 201911 3833255 ~ 3834460 (+) False G138701
TU187669 other upstream 220934 3801853 ~ 3815437 (+) False LOC103047488
TU186618 other upstream 2011985 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 2197854 1835477 ~ 1838517 (+) False LOC103042893
TU187791 other downstream 56158 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 126184 4166042 ~ 4171980 (+) False LOC103023077
TU187927 other downstream 204140 4243998 ~ 4245864 (+) False G138839
XR_002651008.1 other downstream 663488 4703346 ~ 4707243 (+) False LOC103039271
TU188084 other downstream 663494 4703352 ~ 4708095 (+) False LOC103039271

Expression Profile