RNA id: TU187795


Basic Information

Item Value
RNA id TU187795
length 989
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G138758
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4104980 ~ 4114118 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGAtatcagtttttcttttattgttgatgattttggcttacagccaatgaaaccccaaaaatcagtgtctcagaaaattagaatattatacagtataagaccaattggtacttttggcagtgtgggcagtgtgccaagtcctgctgaaaaatgaaatccgcatctccactttggacttgataaaacacagtggatcaacaccagcagatgatcagcatgtctctccaaaccatcactgatcatcagtaaattttacatttcatttaaagtaaatcaagagaccagagtctggaggaagagtggagagacacacagtccaaactgctcgaggtctagtgtgaagtttcaaccaatcagtgatggtttggagagacatgtctgatatctgctgctgttgatccactgtgttttattatcaagtgtAAATTTGTAGatcaaatacatatacatatatgatatGATTTGATATGATTTTAAGACCTCTCCGGGTTCACAATCTCCTCAGTGACGAAGTTGAGTGTGTCCCAGCCGGAGTAGGAGAACAGGGCCGAGTACAGAGCCAGCGCGATGCTGCCAGTATCCATGGCAGAACCTTCAAATGGATTCTCAAAGTTCTTGGTTTCTCCTGAGAAGAACAGTGAGAtgagaaagaaatgagaaaggaagacttaaagaacagaaaaaagtggaaaaacagTTCTCTCATCCCCATAAAGTACAACCCGCCACAAGAAAAGTATACAGTAAGACAGATATAGCCTCACAAATGAGGTTAGTGTacttaaactaatatttttttaatgctgtgtaCTGCagaaattgttattattatattgtttggTCCTAGAAAATGTAACTGAAAGAAGTCTGTAAAATGAGAATTTACAAATGTACCATAAAAAAGGGAAGCGCAACAAAAACAGCCTGTTATAAATTAACTGATGATGTCATGTAACAGATACAAGTTTATTTATGTGCACATTCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651006.1 lncRNA upstream 2739 4095997 ~ 4102241 (+) True LOC111194271
TU187781 lncRNA upstream 32892 4068787 ~ 4072088 (+) True G138747
TU187772 lncRNA upstream 65122 4036371 ~ 4039858 (+) True G138744
TU187754 lncRNA upstream 197857 3881551 ~ 3907123 (+) True G138731
TU187666 lncRNA upstream 351570 3720938 ~ 3753410 (+) True G138671
TU187782 lncRNA downstream 58653 4172771 ~ 4175585 (+) True G138748
TU187942 lncRNA downstream 122551 4236669 ~ 4237527 (+) True G138840
TU187938 lncRNA downstream 123491 4237609 ~ 4245864 (+) False G138839
TU187937 lncRNA downstream 129266 4243384 ~ 4245864 (+) True G138839
TU187940 lncRNA downstream 129266 4243384 ~ 4245864 (+) False G138839
XM_022677846.1 mRNA upstream 9538 4081012 ~ 4095442 (+) True ccdc39
XM_007250681.3 mRNA upstream 24876 4075488 ~ 4080104 (+) True dcun1d1
XM_022677844.1 mRNA upstream 39506 4052730 ~ 4065474 (+) True LOC103033521
XM_022677845.1 mRNA upstream 39506 4060602 ~ 4065474 (+) False LOC103033521
XM_007250680.3 mRNA upstream 58341 4022436 ~ 4046639 (+) True LOC103032574
XM_022677854.1 mRNA downstream 27978 4142096 ~ 4154519 (+) False LOC103022774
XM_022677855.1 mRNA downstream 28246 4142364 ~ 4154519 (+) False LOC103022774
XM_022677853.1 mRNA downstream 30115 4144233 ~ 4154519 (+) True LOC103022774
XM_022677666.1 mRNA downstream 51825 4165943 ~ 4172010 (+) True LOC103023077
XM_022677667.1 mRNA downstream 51889 4166007 ~ 4172010 (+) False LOC103023077
TU187791 other upstream 2766 4096016 ~ 4102214 (+) False LOC111194271
TU187722 other upstream 270520 3833255 ~ 3834460 (+) True G138701
TU187723 other upstream 270520 3833255 ~ 3834460 (+) False G138701
TU187669 other upstream 289543 3801853 ~ 3815437 (+) False LOC103047488
TU186618 other upstream 2080594 2022755 ~ 2024386 (+) True G137929
TU187783 other downstream 51924 4166042 ~ 4171980 (+) False LOC103023077
TU187927 other downstream 129880 4243998 ~ 4245864 (+) False G138839
XR_002651008.1 other downstream 589228 4703346 ~ 4707243 (+) False LOC103039271
TU188084 other downstream 589234 4703352 ~ 4708095 (+) False LOC103039271
TU188085 other downstream 589234 4703352 ~ 4708095 (+) False LOC103039271

Expression Profile