RNA id: TU187927


Basic Information

Item Value
RNA id TU187927
length 1485
RNA type TUCP
GC content 0.48
exon number 6
gene id G138839
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4237609 ~ 4245864 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaatatcataaaattaCCGTCTCTTTCAAGGGGTTCATAGAACGATCCACAAATGTGAACATCTTGAGGACAAAGCGCTTGTAATGGCTGGGGTACTGAAGTCCAGATGACCCATCAACTGGAACCAGGGTGGTCAGGTAGCGATCATCCTTGTTCGGGCACCTTTCAAAAGGAATCAGGTCAATGCTCGCAAGTACTAAAGCAAGGGACCTTAGTGATAGACATGCAGCCAACTTACCCATTCACCAGAAGATCCCACTGAGGTACACTGTCCCGGTCAGGTGTAGAGGTTGCCCAACAGTGTCCCAAGACCAGGACCAGATTGGGATCAGTTCGCCCCAACATGCGCACCTCAACGTATACAGGCTCCCTCAGGACCTTGGTCACAGGGTAGTCATTTTCAGCATAGTAGGAAGTATACGCTACTTGCTCTGTGGAGAACTTCCACACAGCCCTTTGTCACACACTGACCATTGCCAAGCCTCAGCTCTACCCTGAGCGGGCCAGAAGCCATTAAAGGTAGAGGAGGATCATTGGAAGAAAGTGCAACAGCCAGGGACTCGACACTTGTAGCAGAATATCTACACTGGAAGTAAAGCCTGGCAAAAGGATTTAAGAGATTAATAAAAGCTCACAACTTGCAAAACAAATCTTCAGAATCCATGAATCTAACTCACTCGTAGTGGCTGTCTCTTGTGATGGAACCAAGGGGTCCCACACCAACTTCATAGGAAGACACCATTTTGTTCTCATAGACCACATAGTCACTAAACACCTGTTGCGTTTGTTCCACAAGCAGTTACAGGAAACTGGTATATAGCAAAGTCAGCATTATAGTCCACAACAGCACAGGGCCCATCACTTCCTCCCAACAGGCTGATGGAATCCAAGCTGATCCTAGGAAGTGTTGTATTCCGGGCCACCACCAAAACAAACTGCCCATCGACTGTACACTGGACAGTCACTGTTTACCATAGTAGCACTGCTGCCCATCAAAGCAGCAGTTTATAGCACCACAGTGGGAAGCATCCAAGCCTGGTTCACCACAGGGAATCTTGTCAGAATCATCCAGATTACATTTATCAGCAGTAGTTACCTGTACCTGAGGATCAGACCCTGGTGGTAACAGCCCAgaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggcccggaaggctgggaaaaaagtggccCGGAAGGTTGGGGAGCCAGAGGCCCAGAAGGTTGAGAGGGAAGTTGCCAAGATGGCTGAAAAAGAAGTGGCCCAGAAAGCTGGGGAACCAGAGACCCAGATGGCAGCCCAGAAAACTGTGGGGTTTGAGGTTGTTCCTCTGATAGAGCTCGAGGACTCCAACGAGCTACAGCTGCATTGCTCACAGAATTCAACCAAAGAACCACAAATACAATAGAACCCCACATTTTTCTCTGTGCTTCCagcaaaaaacataatggtccaTGTTTCTGCTGACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187942 lncRNA upstream 6471 4236669 ~ 4237527 (+) True G138840
TU187782 lncRNA upstream 68413 4172771 ~ 4175585 (+) True G138748
TU187795 lncRNA upstream 129880 4104980 ~ 4114118 (+) True G138758
XR_002651006.1 lncRNA upstream 141757 4095997 ~ 4102241 (+) True LOC111194271
TU187781 lncRNA upstream 171910 4068787 ~ 4072088 (+) True G138747
TU187978 lncRNA downstream 105517 4351381 ~ 4353535 (+) True G138863
TU187980 lncRNA downstream 108978 4354842 ~ 4355190 (+) True G138865
TU187981 lncRNA downstream 110023 4355887 ~ 4356137 (+) True G138866
TU187982 lncRNA downstream 112033 4357897 ~ 4358171 (+) True G138867
TU187983 lncRNA downstream 113298 4359162 ~ 4359420 (+) True G138868
XM_022677666.1 mRNA upstream 71988 4165943 ~ 4172010 (+) True LOC103023077
XM_022677667.1 mRNA upstream 71988 4166007 ~ 4172010 (+) False LOC103023077
XM_022677854.1 mRNA upstream 89479 4142096 ~ 4154519 (+) False LOC103022774
XM_022677855.1 mRNA upstream 89479 4142364 ~ 4154519 (+) False LOC103022774
XM_022677853.1 mRNA upstream 89479 4144233 ~ 4154519 (+) True LOC103022774
XM_007250689.3 mRNA downstream 61784 4307648 ~ 4326399 (+) True LOC103035115
XM_007250691.2 mRNA downstream 93219 4339083 ~ 4344329 (+) True extl2
XM_007250692.3 mRNA downstream 139754 4385618 ~ 4393644 (+) True LOC103035953
XM_022677867.1 mRNA downstream 399137 4645001 ~ 4658142 (+) True LOC103026534
XM_022677869.1 mRNA downstream 427516 4673380 ~ 4681158 (+) False LOC103026815
TU187783 other upstream 72018 4166042 ~ 4171980 (+) False LOC103023077
TU187791 other upstream 141784 4096016 ~ 4102214 (+) False LOC111194271
TU187722 other upstream 409538 3833255 ~ 3834460 (+) True G138701
TU187723 other upstream 409538 3833255 ~ 3834460 (+) False G138701
TU187669 other upstream 428561 3801853 ~ 3815437 (+) False LOC103047488
XR_002651008.1 other downstream 457482 4703346 ~ 4707243 (+) False LOC103039271
TU188084 other downstream 457488 4703352 ~ 4708095 (+) False LOC103039271
TU188085 other downstream 457488 4703352 ~ 4708095 (+) False LOC103039271
TU188086 other downstream 457488 4703352 ~ 4708095 (+) False LOC103039271
TU188088 other downstream 457488 4703352 ~ 4708095 (+) False LOC103039271

Expression Profile