RNA id: XM_015603959.2


Basic Information

Item Value
RNA id XM_015603959.2
length 1286
RNA type mRNA
GC content 0.41
exon number 1
gene id kiaa0040
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 986421 ~ 987706 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacagttttaagcCTTTCTTTTAGAGTTTTTagtctttttaaagagttttaattttttttgtttgtttgttttaacccGGGATATTTGTGTTTGGTCTGTAAATGCGTCCCGGGGCAGCGGAGGAACCTGCAGGAACTGGCTGAACAATGAAAGAGCAGATCATGGAGTTTTTTAATGACTTGTGGGGACTCGCGACCTCCAAGCACAATGAGGGAATCTACAACACGGTGTGTCTGGTGGTTCTCCTCACGCTGCCGCTGGTGGTCCTCTTCACCTCGCTGGTGGtttgctgccactgctgctgctgctgccgctcgCACGGCTGCCGGTGCTGCTGCCACCGAGAGCGTAGCGCCGTCacgagcagccaatcagaaaagagcaagaagaagaagaccaaGAAGAACGGCGGGCAGACGGAGGAGGACCTGTGGATTTCAGTAAAGACGGACCCTACGACTCCAGACCGAGTGGCCCTCACTGTGGTGTAGCTCACAGGCTTTTTACAGGCTTTATTCAGCACCAAAAATCTGTGTATATAagtttactgtataataatttaTGTCTCGTTTCTGAGGAACAAACGGTACTGATGATTGTACTGTAGTTACTTTAAATTTGACGTGcctgaaaaaagggaaaagtaaTGATGGAATGatgcaaaatccacaaaaatgctTCTTAAAAGAAGTTTCTCTATTCTCAATTTGGTCCAAATCAGTTATTTAAGCATCCTACACTCCAGACCAGCACATGCACTGTGAAGctgattttaaattaaaggagaatttacttttggtgtagtatgacataataaagagtactaactTTTGTTAAATAGATCACCTCCGCTCTTCTGCAGCTTTCCAAGATATCAAAGTAGATCCACAACTcattgctagaatccagagagccctgacatttaaaacaaggcattaataactttaaaagtgcacaaaaagcttattaaaaaccactgtttagaACCTGTAgagctagcttcagctccgggCGCTGCTATCTTATAGTAAAAAAGgcatgatcagtacagtgatggtggcgtCAAGAGATTAGGCTAAGCTATGtattgtaaaatgtgttttttaataagctttttgtgcacttttaaagttcttaatgctttgttttaaatgttaaagcTCTAGATTCTATTAATGAGGTTTGGAGCAACTTTAAGGCTGGATAAtagtgtaaaaagcaatttatctgcaAGAAAGCTGAgcaaaaagcataaaattactctttatcatgttttactacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_452701.2 lncRNA upstream 267 980933 ~ 986154 (+) True LOC103021626
TU186362 lncRNA upstream 236011 749841 ~ 750410 (+) True G137737
TU186354 lncRNA upstream 331972 654221 ~ 654449 (+) True G137729
TU186349 lncRNA upstream 459354 526248 ~ 527067 (+) True G137725
TU186264 lncRNA upstream 628602 343868 ~ 357819 (+) True G137669
TU186427 lncRNA downstream 113682 1101388 ~ 1226517 (+) True G137782
TU186509 lncRNA downstream 363568 1351274 ~ 1455746 (+) True G137839
TU186520 lncRNA downstream 452557 1440263 ~ 1440805 (+) True G137850
TU186489 lncRNA downstream 504110 1491816 ~ 1499956 (+) True G137826
TU186491 lncRNA downstream 504110 1491816 ~ 1499956 (+) False G137826
XM_022677747.1 mRNA upstream 17087 814838 ~ 969334 (+) False tnr
XM_022677744.1 mRNA upstream 17087 814839 ~ 969334 (+) True tnr
XM_022677746.1 mRNA upstream 17087 814839 ~ 969334 (+) False tnr
XM_022677745.1 mRNA upstream 17087 814839 ~ 969334 (+) False tnr
XM_022677743.1 mRNA upstream 205225 762715 ~ 781196 (+) False rfwd2
XM_022677751.1 mRNA downstream 50155 1037861 ~ 1039970 (+) True mrps14
XM_022677752.1 mRNA downstream 53184 1040890 ~ 1044717 (+) True cacybp
XM_022677753.1 mRNA downstream 58561 1046267 ~ 1057525 (+) True plk3
XM_022677754.1 mRNA downstream 82301 1070007 ~ 1082320 (+) True LOC103047582
XM_022677755.1 mRNA downstream 82411 1070117 ~ 1082321 (+) False LOC103047582
XR_002651002.1 other upstream 205225 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 891848 93285 ~ 94573 (+) True G137614
TU186409 other downstream 50163 1037869 ~ 1039926 (+) False mrps14
TU186490 other downstream 509593 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 639249 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 847771 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 1035049 2022755 ~ 2024386 (+) True G137929

Expression Profile